RnoINT0070985 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10152017-10152557:+
Coord C1 exon
chr17:10152017-10152172
Coord A exon
chr17:10152173-10152323
Coord C2 exon
chr17:10152324-10152557
Length
151 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCT
5' ss Score
7.63
3' ss Seq
CTGTTCTTTCCTGGCCCCAGTGA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTGAGAAAATGATCAGCGGAATGTACCTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAGTCTTGGAGTTCTCTTCCGGGGCCAGAAGACGCAATGCCTTCAGACCAGGGACATCTTTAAGACCAAGTTTCTCTCCGAGATTGAGAG
Seq A exon
GTACCTGCGTGGCAAGGCAGTTTGTTTCTGGGGGGGGGGGGGGAGTATGATGGATGCCTCTGGTTCCCTTACTCCGGAGGAGGAAATAGGAGAAACCTTGAGAGAAAGAGTGAGGGAGTCAATTCTCTATTCTGTTCTTTCCTGGCCCCAG
Seq C2 exon
TGACAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAGGACCTGGGGCTGACTCTGACGTCTGATGATGCCTTGATGGTCCTAGAGGTGTGCCAGGCTGTGTCCCGCAGGGCCGCCCAACTCTGCGGGGCAGGTGTGGCTGCAGTGGTGGAAAAGATACGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGGGAGTGGATGGGACGCTCTACAAGCTACATCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGAGTTCTCTTCCGGGG
R:
ATCTTTTCCACCACTGCAGCC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]