MmuINT0078007 @ mm9
Intron Retention
Gene
ENSMUSG00000025877 | Hk3
Description
hexokinase 3 [Source:MGI Symbol;Acc:MGI:2670962]
Coordinates
chr13:55107764-55108322:-
Coord C1 exon
chr13:55108167-55108322
Coord A exon
chr13:55107998-55108166
Coord C2 exon
chr13:55107764-55107997
Length
169 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTGTTCCTTCCTGGCCCCAGTGA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTTGAGAAAATGATCAGCGGTATGTACTTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATCTCGGAGTTCTCTTCCGAGGCCAGAAGACTCAATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCTCTCTGAGATCGAAAG
Seq A exon
GTACCTGTGTTGCAAGGGAGTTTGTTTCTGGTGAAGGATGCTGGATGCTGCTGGTTCCCTCCACTCTGGACCACTCTGGAGGATGAAGTGGGGGAAACCTTGAGAGATGGGTGTGTGTGTGGGGGGGGGGGTAAAGCTAATTCTCTATCCTGTTCCTTCCTGGCCCCAG
Seq C2 exon
TGATAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACTCTGACATCTGATGACGCCTTGATGGTCCTGGAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCTGTGGGGCAGGTGTGGCTGCCGTGGTGGAGAAGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGGGAGTAGATGGGACACTCTACAAGCTACATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025877-Hk3:NM_001033245:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTTCCGAGGCCAGAA
R:
GAATCTTCTCCACCACGGCAG
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: