HsaINT0076841 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1073674-1074014:+
Coord C1 exon
chr19:1073674-1073746
Coord A exon
chr19:1073747-1073947
Coord C2 exon
chr19:1073948-1074014
Length
201 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTGCGTCTCCGTCCTACAGTCC
3' ss Score
9.52
Exon sequences
Seq C1 exon
AGTGTCCGAGTTCCTCATGGGTGAAGTGGACAGCAGCACCCTCCTAGCAGTGCCTCCTGGGGACTCGAGCCAG
Seq A exon
GTGAGTGGGGTGGGCCAGGGCCACCTGTGTCCAGCTTCTGGAGGCCAGCCGGGTTCAGGTCTGCAGGGCCCAGACAGTCACCCTGCTTCCCCTGTGCGCCTTGGTTTCCCTCTCTGGGGGAGGCAGCAACCGTCCCCTGAAGGGTGGGCACTGCCCAGGGCCCCGCATGGGGCTGGTCTCACCTGCGTCTCCGTCCTACAG
Seq C2 exon
TCCATGGAAAGCCTGTATGGACCGGGCAGTGAGGGCACGCCTCCCAGCCTGGAAGACTGTGACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCCGAGTTCCTCATGGG
R:
CGGCGTCACAGTCTTCCAG
Band lengths:
140-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development