HsaINT0076973 @ hg19
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Coordinates
chr2:178081231-178081499:+
Coord C1 exon
chr2:178081231-178081320
Coord A exon
chr2:178081321-178081403
Coord C2 exon
chr2:178081404-178081499
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCCTTGCCTGTATTAAAGGTC
3' ss Score
8
Exon sequences
Seq C1 exon
TTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAG
Seq A exon
GTGAGTAGGACCATACACATGTATACAGTGGATATGAGTGGTGTTTGTAAGGTTCTTAAAAATCTCCCTTGCCTGTATTAAAG
Seq C2 exon
GTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-HNRNPA3:NM_194247:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(17.1=38.7),PF072928=NID=PD(62.8=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAATACCACACTATTAATGGGCA
R:
TCCACCAAAGTTTCCACCACG
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)