GgaINT0048001 @ galGal4
Intron Retention
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15332874-15333132:-
Coord C1 exon
chr7:15333043-15333132
Coord A exon
chr7:15332967-15333042
Coord C2 exon
chr7:15332874-15332966
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAAAGTAAAATACTTTTCAGGTC
3' ss Score
4.15
Exon sequences
Seq C1 exon
TTCAGAAATACCATACTATAAATGGTCATAACTGCGAAGTGAAAAAAGCACTCTCAAAACAAGAGATGCAGACTGCCAGCTCTCAGAGAG
Seq A exon
GTAAGTATATAGTTATGCAGAGTTATTGTACATAACTGGTTTTCAATTAATGTAATTAAAGTAAAATACTTTTCAG
Seq C2 exon
GTCGTGGGGGTGGTTCAGGCAACTTCATGGGTCGTGGAAATTTTGGAGGTGGTGGAGGAAACTTTGGCCGAGGAGGAAACTTTGGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250:ENSGALT00000038715:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(17.1=38.7),PF072928=NID=PD(63.6=90.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTATAAATGGTCATAACTGCG
R:
CCACCAAAGTTTCCTCCTCGG
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]