MmuINT0078455 @ mm9
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75500544-75500813:+
Coord C1 exon
chr2:75500544-75500633
Coord A exon
chr2:75500634-75500717
Coord C2 exon
chr2:75500718-75500813
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACTCCAATTCTTGTTACAGGTC
3' ss Score
8.57
Exon sequences
Seq C1 exon
TTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAG
Seq A exon
GTGAGTAGGCTCAGATACACATAAACAGTGGGCATGAACAGTTGTGGGAAAGATGTGAACTTTTCACTCCAATTCTTGTTACAG
Seq C2 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-Hnrnpa3:NM_053263:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=NA C2=0.530
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(17.1=38.7),PF072928=NID=PD(62.8=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAATACCACACTATTAATGGGCA
R:
ACCAAAGTTTCCTCCACGACC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: