HsaINT1015770 @ hg38
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216503-177216771:+
Coord C1 exon
chr2:177216503-177216592
Coord A exon
chr2:177216593-177216675
Coord C2 exon
chr2:177216676-177216771
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCCTTGCCTGTATTAAAGGTC
3' ss Score
8
Exon sequences
Seq C1 exon
TTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAG
Seq A exon
GTGAGTAGGACCATACACATGTATACAGTGGATATGAGTGGTGTTTGTAAGGTTCTTAAAAATCTCCCTTGCCTGTATTAAAG
Seq C2 exon
GTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144:ENST00000392524:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.530
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(17.1=38.7),PF072928=NID=PD(62.8=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAATACCACACTATTAATGGGCA
R:
TCCACCAAAGTTTCCACCACG
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains