HsaINT0077381 @ hg19
Intron Retention
Gene
ENSG00000105707 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:5155]
Coordinates
chr19:35532626-35533426:+
Coord C1 exon
chr19:35532626-35532776
Coord A exon
chr19:35532777-35533356
Coord C2 exon
chr19:35533357-35533426
Length
580 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCCCGTCCATCTCCTCACAGGTC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GTGAGGCAGCCTGGCCTAGCAGGCCCCACGCCACCGCCTCTGCCTCCAGGCCGCCCGCTGCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCGACCCCGGCACTACCTCGAGGCTCCGCCCCCACCTGCTGGACCCCAGG
Seq A exon
GTAAGGACAAGGGCCCCCAGACTCACAGTTCCAGCCCTGAGGACAGGGGTTCCCTCATCCCCCCACCCAGCCTAATGCCCACCTCCTAATAGAGGGGTTCCTGGGGACCTGAAGAGGGGGCACTATGACGTCCCCCCAAGCACCTAGGTGTTCTGTCCTGCTCTTCCTTCAGACTCAGCCGTTGGACCCCAGTCCTTTCCTCCCCAGACCCAGGAGTTCCAGCCCTCAGGCCCCTCCTCCCTCATACTAGGGAGTCCTGGCCCCCAAATTCCTCCTTTCCCAAGACTTATGATTTCAGGTCCTCAGCTGTCTCCTCCCTCAAACCGGGATCCTCAGTCCCCTGCTCCACCAGGCTCAGGCATGGGGGTCCCCATCCCTGCAAATCCAGGCGTCCCCCCGCTGCTGGTCAGACACTGACCCCATCCTTGAACCCAGCCCAATCTGCGTCCGTGATCACGGCGTGCTCTGGCCAAGGCCCAGTCCCTACAGCCTGCCTGGATGGACGCCTGGGACTGGGGGCGCCAGGACTGGGCTGGGCTGGGCTCCCCCAGGCCCTGCCTCCCCGTCCATCTCCTCACAG
Seq C2 exon
GTCCCACCCTGGCCCAGGAGGTCAGCCAGGGAATCATTAACAAGAGGCAGTGACATGGCGCAGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105707-HPN:NM_002151:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.452
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF092725=Hepsin-SRCR=PU(4.6=50.0)
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTGGCCTAGCAGG
R:
CTCCTTCTGCGCCATGTCAC
Band lengths:
215-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)