HsaEX0030400 @ hg19
Exon Skipping
Gene
ENSG00000105707 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:5155]
Coordinates
chr19:35532626-35540295:+
Coord C1 exon
chr19:35532626-35532776
Coord A exon
chr19:35533357-35533426
Coord C2 exon
chr19:35540194-35540295
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCCGTCCATCTCCTCACAGGTC
3' ss Score
12.23
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGAGGCAGCCTGGCCTAGCAGGCCCCACGCCACCGCCTCTGCCTCCAGGCCGCCCGCTGCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCGACCCCGGCACTACCTCGAGGCTCCGCCCCCACCTGCTGGACCCCAGG
Seq A exon
GTCCCACCCTGGCCCAGGAGGTCAGCCAGGGAATCATTAACAAGAGGCAGTGACATGGCGCAGAAGGAGG
Seq C2 exon
GTGGCCGGACTGTGCCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCACTGCGGGGACCCTGCTACTTCTGACAGCCATCGGGGCGGCATCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105707_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.452 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF092725=Hepsin-SRCR=PU(4.6=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATGCTCCTGCCCA
R:
CCCCGATGGCTGTCAGAAGTA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)