MmuEX0023218 @ mm10
Exon Skipping
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31110714-31115275:-
Coord C1 exon
chr7:31115136-31115275
Coord A exon
chr7:31114678-31114744
Coord C2 exon
chr7:31110714-31110773
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTTCCTGTCCCTAGGTT
3' ss Score
12.64
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGCTCGGCAGGCCCCACGCTGCTGGCTGCTGCTGCCACCCTTGCCTTCCGGGCTGTCCGCTGCTGTGGGGACAGACACCATGCCCCTGCCCAGGCCCGGAGACTAACCCCAAACCTGCACCATCTCCGGCGAACCCCAGG
Seq A exon
GTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq C2 exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTTCAAGACCCCAACCTGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249-'0-9,'0-1,2-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.825
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCCTTGCCTTCC
R:
CCTTTCCAGGTTGGGGTCTTG
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types