DreEX0005078 @ danRer10
Exon Skipping
Gene
ENSDARG00000027609 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr16:45306858-45321883:-
Coord C1 exon
chr16:45321711-45321883
Coord A exon
chr16:45320930-45321031
Coord C2 exon
chr16:45306858-45306959
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCATTTCTTAACATTTCCAGGTC
3' ss Score
8.03
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GACAAGAGCCGGAAAACAGAAGCTTCATTTAACACCAAATAAAAGAGCCTTAGACTCCGGGGAAACGGAAATGTCAGCGCGAATATCTGAAGAAAACAACTGATTAACGTTTTTTTCAGCTCTTTGTTACTTATTCACGAGTTTATTCAAGAAGCTGAAGTGAAGAGGTGGAG
Seq A exon
GTCTGAAAGAACATCAAGTCGGATTTTTTGAGGAGGAATCATCTATTGGAAGCTTATATTTCAGCTTTCTTATTTGGATGAACATGTCAGAGAAGAAGGTCG
Seq C2 exon
GACGTCCAGGCATGAGCATCTTCAGTCCATGCCGGGTGGTCGCTGCAGTTTCTCTGATCTTGATTATTCTGGGAGGGCTGGGAGCCGCCATCTGGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027609-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGAAAACAGAAGCTTCA
R:
CTCCCAGCCCTCCCAGAATAA
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]