BtaEX6081641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003829 | HPN
Description
Bos taurus hepsin (HPN), mRNA. [Source:RefSeq mRNA;Acc:NM_001080241]
Coordinates
chr18:45971859-45979219:+
Coord C1 exon
chr18:45971859-45972006
Coord A exon
chr18:45972571-45972640
Coord C2 exon
chr18:45979118-45979219
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTCATCTCCCCACAGGTC
3' ss Score
12.6
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCCAGGCCTAGCAGGCCCCTCGCGCTGCCGCTGCCTCTGCCTCCGGCCCGCCTGCCGCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCTAAACCCGCACCATCTCTCAGCTCCGCCCCCACCTGCCGGACCCCAGG
Seq A exon
GTCCCGCCCCGGCCCCGGAGGTCAGCCGGGGAATCATTAACTAGAGGCTGTGACATGGCGGAGAAGGAGG
Seq C2 exon
GTGGCCGGACTGTGCCATGCTGCTCCGGACCCAAGGTGGCCGCTCTCACTGTGGGGACCGTCCTGCTCCTGACAGGCATCGGGGCAGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003829-'0-5,'0-2,1-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGAGACTGACCCTAAA
R:
CAATGGCCCAGGACGCTG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]