RnoEX0042442 @ rn6
Exon Skipping
Gene
ENSRNOG00000021097 | Hpn
Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89545449-89549546:-
Coord C1 exon
chr1:89549446-89549546
Coord A exon
chr1:89548990-89549056
Coord C2 exon
chr1:89545449-89545549
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTTCCTGTCCCTAGGTT
3' ss Score
12.64
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CACCCTTGCCTCCCGGGCTGCCCGCTGCTGTGGGGACACCATGCCCCTTCCCAGGCCCGGAGACTAACCCCAAACCTGCACCATCTCCGGCGAACCCCAGG
Seq A exon
GTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq C2 exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTCCAAGACCCCAGCCTGGAAAGGGTAAGGCCATTATTTTATACTTTATCCTTTCTTTTATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097-'0-2,'0-1,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACACCATGCCCCTTCC
R:
AATAATGGCCTTACCCTTTCCAGG
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]