HsaINT0077381 @ hg38
Intron Retention
Gene
ENSG00000105707 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr19:35041722-35042522:+
Coord C1 exon
chr19:35041722-35041872
Coord A exon
chr19:35041873-35042452
Coord C2 exon
chr19:35042453-35042522
Length
580 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCCCGTCCATCTCCTCACAGGTC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GTGAGGCAGCCTGGCCTAGCAGGCCCCACGCCACCGCCTCTGCCTCCAGGCCGCCCGCTGCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCGACCCCGGCACTACCTCGAGGCTCCGCCCCCACCTGCTGGACCCCAGG
Seq A exon
GTAAGGACAAGGGCCCCCAGACTCACAGTTCCAGCCCTGAGGACAGGGGTTCCCTCATCCCCCCACCCAGCCTAATGCCCACCTCCTAATAGAGGGGTTCCTGGGGACCTGAAGAGGGGGCACTATGACGTCCCCCCAAGCACCTAGGTGTTCTGTCCTGCTCTTCCTTCAGACTCAGCCGTTGGACCCCAGTCCTTTCCTCCCCAGACCCAGGAGTTCCAGCCCTCAGGCCCCTCCTCCCTCATACTAGGGAGTCCTGGCCCCCAAATTCCTCCTTTCCCAAGACTTATGATTTCAGGTCCTCAGCTGTCTCCTCCCTCAAACCGGGATCCTCAGTCCCCTGCTCCACCAGGCTCAGGCATGGGGGTCCCCATCCCTGCAAATCCAGGCGTCCCCCCGCTGCTGGTCAGACACTGACCCCATCCTTGAACCCAGCCCAATCTGCGTCCGTGATCACGGCGTGCTCTGGCCAAGGCCCAGTCCCTACAGCCTGCCTGGATGGACGCCTGGGACTGGGGGCGCCAGGACTGGGCTGGGCTGGGCTCCCCCAGGCCCTGCCTCCCCGTCCATCTCCTCACAG
Seq C2 exon
GTCCCACCCTGGCCCAGGAGGTCAGCCAGGGAATCATTAACAAGAGGCAGTGACATGGCGCAGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105707:ENST00000392226:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF092725=Hepsin-SRCR=PU(4.6=50.0)
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTGGCCTAGCAGG
R:
CTCCTTCTGCGCCATGTCAC
Band lengths:
215-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development