HsaINT0079514 @ hg19
Intron Retention
Gene
ENSG00000128322 | IGLL1
Description
immunoglobulin lambda-like polypeptide 1 [Source:HGNC Symbol;Acc:5870]
Coordinates
chr22:23915313-23917269:-
Coord C1 exon
chr22:23917154-23917269
Coord A exon
chr22:23915773-23917153
Coord C2 exon
chr22:23915313-23915772
Length
1381 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CCCCTCCTCTGTCCACACAGGTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
GTTCCTGCTCCAGCGCGGCTCCTGGACTGGCCCCAGGTGCTGGCCCCGGGGGTTTCAATCCAAGCATAACTCAGTGACGCATGTGTTTGGCAGCGGGACCCAGCTCACCGTTTTAA
Seq A exon
GTAAGTGGCTCTAACTTCCCAGGCTGTCCCACCCTCTCCTGTCTCTGGAAAATGTGTTTTCTCTCTCTGGGGCTTCTTCCCCTCTGCCCTCCCAGCCTTAAGCACTGACCCCTACCTTTGTCCATGGGGCCTGGAGGAGATGTGTTAGTCTCAGGGTAATGGCAGGAAGGGCCCCCACAGTGGGAGCAGCCGCCTTCAGGTTCCAACAGCAGGACACAGCCTGGTCCCAGGGCCTGGGCTGGGATTGGGCGGGGTCAGGGCTCCTCCCCTCTCCCAGGGCAGATGTCTGAGTGAGGGACAGAGGCTGGTTCTGATGAGGGGCCCTGCAGTGGCCTTAGAGACAGTCCCTGGGACCCCAGGTTCTAGGCTGAGGGCTGGATGCCCATCCAGCCTGGGAGGGCCACACGGGGGCCTGGGGACACAGGGGTCACCCCCAGGGGAGACCAATGGAGGGCACAGAGAGGGCTCTGGGTCTAGGCTGCAGCTCTGTGGCCTCTGCTGGGTCTTCAGGGCATGGGGACACAGAGGAACGGATGAGGTCCCAGAGCCCAGCCCTCCCAGGACAGTCACCAGAAAGGAGAGGGTCTCTTAGTGCAGAGATGTGCCTGTCCCTGGAGCCCTGTCATCTCTGGGGCCTGGTGTCTCTCTGTTCATGGGTCGACCTCCCACCTTCATTTGAGGAAGGGCACCTTAGACTCAGAAGGTGACTAGCGGGGAGTAAACGGGAGTGCAGAGAACTCCATGGCTGCCAGGTGAAGTCCAGGGGCATCAGAGGCTGCTGGGGTGGGCATGGGGGCTGCGGTGCCCCAAAGTCTGGGGGAGCAGCCCCAAGAACCCAGCCGATGTGAAGGGTCCTGTGGTCGGGCTGGTGGGGACAGGGGCGACGGCAGAGCCCCAGGGTGTGTCTGGGTGGAGCCCACGCTTCACCAGGAGAGCTGAGTGGGCCAGGCTGGGGCACAGCCTGGTGCCCCAGGGGATGGGAAGCTCCAGGCCATGCCAGGCTTGGGTCTCCCCACATCCTGCCAGTATAGTTTTGTGTGCTGTGAGGGAGACCCCTAGATTCCAAACTCAGACTCCAGAAACCAGGAAGGAGGGAGCACAGCCTGCCCTGGGTGCACACGGGGAAACCGAGGCTGCAGAGGAAAGGGCTGGGCCAGGACACCTGGGAAAGGTGACTTGGGAAGGGCTCCTAGGAAGGCACAGGGCTGTCTGCTCTCCAGAGGGCTCCAGTGGAAAGGAGGGAATGAGGAGGGAAGGAGAGGCCCTGGGTGGACCAGGCGGCCACACCATGAACCCTCCCAGAGACTTTAGACAGAGAGAGGCGCTCCACAACACCCCACACTCCCTCTGCCATCTCTCACCCCCTCCTCTGTCCACACAG
Seq C2 exon
GTCAGCCCAAGGCCACCCCCTCGGTCACTCTGTTCCCGCCGTCCTCTGAGGAGCTCCAAGCCAACAAGGCTACACTGGTGTGTCTCATGAATGACTTTTATCCGGGAATCTTGACGGTGACCTGGAAGGCAGATGGTACCCCCATCACCCAGGGCGTGGAGATGACCACGCCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAGGTCCCGCAGAAGCTACAGCTGCCAGGTCATGCACGAAGGGAGCACCGTGGAGAAGACGGTGGCCCCTGCAGAATGTTCATAGGTTCCCAGCCCCGACCCCACCCAAAGGGGCCTGGAGCTGCAGGATCCCAGGGGAAGGGTCTCTCTCTGCATCCCAAGCCATCCAGCCCTTCTCCCTGTACCCAGTAAACCCTAAATAAATACCCTCTTTGTCAACCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128322-IGLL1:NM_020070:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGTTTCAATCCAAGCAT
R:
CTCCCTTCGTGCATGACCTG
Band lengths:
350-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)