GgaINT0007247 @ galGal4
Intron Retention
Description
Ig lambda chain V-1 region [Source:UniProtKB/Swiss-Prot;Acc:P04210]
Coordinates
chr15:7928727-7931015:-
Coord C1 exon
chr15:7930984-7931015
Coord A exon
chr15:7929246-7930983
Coord C2 exon
chr15:7928727-7929245
Length
1738 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GCTCTGCCTCTCTCTTGCAGGCC
3' ss Score
12.55
Exon sequences
Seq C1 exon
ATTTGGGGCCGGGACAACCCTGACCGTCCTAG
Seq A exon
GTGAGTCGCTGACCTCGTCTCGGTCTTTCTTCCCCCATCGTGAAATTGTGACATTTTGTCGATTTTTGGTGATTTGGGGGTTTTTCTTGGACTTGGCGGCAGGCTGGGGTCTGCCACCGGCGCAGGGCCGGGCACTCAGCGCGGCAGCCTGGGCTGAGTCTTGTCCCCACCGAGCCGGAGGGCTCCGGTGTGCGCCATGGAGGACTTAGGGTTATTTTGTCAATGGAAAGTTCTTAAAATTTGACCAGAAAATGTGCCCGAGGTCTGTCTCTGCCACACGATTTCAGAAATTGTGTCTAGGTCGATGAGAAGACAGTTTTTGTCTTTGTCAGGAAATTAGTTGTGAGTTGTTAGTCCTTCCCTCTTAGTCCTAAGGACTAAGACCTTTGTCCCCGGTCTGGTCTCTCACTGGGGACTCTTGGCTCCAGTGCCATGGGGAGCCCAAGTGTCACTGACACGGTGTCCTTGGGGGTGAAATTCAGTTTTTCAGCTGTCCAGGTAAGTGCTGTCAAAAAATGGAGGTTATTCTGCTGAAAAAGCTGAGAGGAATATTTTGTCATTTTTTTCGGAAATATATATATATATATATATATAAATATATAAATTATTTATATATTTTATATATATATATATATAAAATATATGTATTTCTCTCTTTCTTTTTATATATATATATAAATATATATATATTTCTCCCTCTTTCTTTATATATATTTATAGGGAGAGAATCTATATTTTTGGCCAATTTGGCCAATTTCTCTCTCTCTCTCTTTATATATATATATATATATATATGTAATTTATATATATATATATAAATTTATATTTATTTATTTATTTATTTATATAGATTATTTTTATATACATATATATATATAAATTTGGCCAATTTAGAAGAAATTGGCCAAAAAAACCCAATCTGAACCAAATTACTTAGGGCATAAGTCCAAAAAAAAAGTGCAGTTCAAGAATTCCTCGCTGGAAAGTTTTTAATGGGGGCAGTTCTTCCCCATTTTCTGGTGTAGATATGAGTGAAGATATAGATATGTATGTAGATATAGATTTGGCTATAGTTTGTTTGATGAACAGTCTGAGGAAGAGTAAATCTTGCCTTCCTCATGGCAATTTTTAATTCTACTTCTTCTGAGACAAGTCTGAACATGCCTTGAGGTAGAAAGAGCCCGAAAATTGAGTGCTTTTTCTTTGAAATTTTAATTAAAATTAAAAAATAGCCTTACAGCAGGAAAGAAAGGGGGTGATGGCAGCTAATCGGAGTTCCAAAGCTGAACCACGTTCACCCAAACACGTGGTTGAAATTTTGTGTGTGTATATATATAAATATATATATGTATACAAAAGAAAATGCCTATATATAAAAAAATTGTTATGTATATTATATAGATTTATTATAGATATGTACATAAGATATAACACGTATACATATATATGTAGTCTGCTGTATGCTTTGTATAAATTTTTATAGATATGATGTATATTATATGCATGGGTTATATATCTATAATATATTTTATCTGTAGAAGGAACTACAGTATAAAATGCATATATGCGTATATATACACATATTTATATATATGTGTATATATATGTATACGCACACGTATAACATCCATGAAAATAGATATGGATGGGTGGATGTGTTTGTTTTACAGAGGTGCATGTGTGTCTGTACATACACAGCCATACATACGCGTGTGGCCGCTCTGCCTCTCTCTTGCAG
Seq C2 exon
GCCAGCCCAAGGTGGCCCCCACCATCACCCTCTTCCCACCGTCAAAGGAGGAGCTGAACGAAGCCACCAAGGCCACCCTGGTGTGCCTGATAAACGACTTCTACCCCAGCCCAGTGACTGTGGATTGGGTGATCGATGGCTCCACCCGCTCTGGCGAGACCACAGCACCACAGCGGCAGAGCAACAGCCAGTATATGGCCAGCAGCTACCTGTCACTGTCTGCCAGCGACTGGTCAAGCCACGAGACCTACACCTGCAGGGTCACACACAACGGCACCTCTATCACGAAGACCCTGAAGAGGTCCGAGTGCTAATAGTCCCACTGGGGATGCAATGTGAGGACAGTGGTTCCTCACCCTCCCTGTCCCTCTGGGCCGCTGCTGGTGGCAGCAGCCCTCACTTCCCACTCAGATGTCCCCCACCGTGCCCCCATCACCCACCTCTGCCTGTCGACTCCTCTTGCCCTCATCTCTCCAGGTGTCACATTAATAAACACGACACTGAACTAGTGCTGACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021139:ENSGALT00000009519:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF0768612=V-set=PD(8.6=75.0)
A:
NA
C2:
PF0765410=C1-set=WD(100=81.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACCCTGACCGTCCTAG
R:
GGGACTATTAGCACTCGGACCT
Band lengths:
342-2080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]