HsaINT0079519 @ hg38
Intron Retention
Gene
ENSG00000254709 | IGLL5
Description
immunoglobulin lambda like polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:38476]
Coordinates
chr22:22893697-22896107:+
Coord C1 exon
chr22:22893697-22893818
Coord A exon
chr22:22893819-22895374
Coord C2 exon
chr22:22895375-22896107
Length
1556 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCCCTTCCCTGTCCACACAGGTC
3' ss Score
11.84
Exon sequences
Seq C1 exon
CAGGCTCCTGCTCCAGCCCAGCCCCCAGAGAGCAGACCCCAGGTGCTGGCCCCGGGGGTTTTGGTCTGAGCCTCAGTCACTGTGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
Seq A exon
GTAAGTGGCTCTCAACCTTTCCCAGCCTGTCTCACCCTCTGCTGTCCCTGGAAAATCTGTTTTCTCTCTCTGGGGCTTCCTCCCCTCTGTCCTCCCAGCCTTAAGCACTGACCCTTACCTTTCTCCATGGGGCCTGGAGGAGGTGCATTAGTCTCCGGGTAACCGGCAGGAAGGGCCTCCACAGTGGGAGCAGCCGGATGCAGCCTGGTCCCGGGGCCTGAGCTGGGATTGGGCAGGGTCAGGGCTCCTCCTCTCTTCCAGGGCAGATGTCTGAGTGAGGGACAGAGGCTGGTTCTGATGAGGGGCCCTGCAGTGTCCTTAGGGACATTGCCCAGTGACTCCTGGGGTCAAGGACAGAGGCTGCTGGGGTGGGCCTGGGAGCTGCTGAGTCTCATAGTCTAGGGGAGCAGCCCCAAGAACAGCTGAGGGTCTAGGCTGAGGACTGGATGCCAATCCAGCCTGGGAGGGCCACACGGCCTGGTGACACAGAGGTCACCCCAAGGGGAGACCAATGGAGGGCACAGAGAGGGCTCTGGGTCTAGGCTGCAGCTCTGTGGCCTGTGCTGGGTCATGAGGACATGGGGACACAGAGGGACGGGTGAGACTGGGTGAGGTGCCAGAATCCAACCCTCCCAGGACAGTCACCAGAAAGGAGACAGTCTCTTAGGGCAGAGATGTGTCTGTCCCTGGAGCCCCGTCACCTCTGGGGCCCAGTGTCTCTCTGTTCACGGATCGGCCTCCTGCCTTCCTCAAAGGGCATGTTAGACTCAGGAAATGACCAGAGGGGAGTGAATGAGGGGTGCAGAGAACTCCATGGCTACCAGGTGAAGTTTGGGGTCATCACAGGCTGCTGGGGTGGGCCTGGGGGCTGCTGAGTCTCATAGTCTGTGGGAGCAGCCCCAGGAACAGCTGAGGTGAAGGGTTCTGTGGTCGGGCTTGTGGAGACAGGAAACATCTCAGAGCCTCAGAGGAGCCCTGAGGCTTGTCTAGGTGGAGCCCACTCCTTGCCAGGAGAGCCAAGTGGGCTGGGCTGGGGCAGAGCCCGGTGCCTGTGAGGGATAGGAAGCTCCAGTTCAAAGCAGGCTTGGGTCTCCCCACACACTGCCTGCCAGGACAGTCCTACAGGATGAGCAGGGGACCCACAGTTCACGGAGGAGGCTCTAGGTCCTGGAAGAATAAAGTGGGTGATGGAGGGGGGTATAGGGATGGAAATGAGGGATCCAGGGGTCAAGGCCAGATTCTAAACTCAGACTCCAGAGATCAGAGAAGAAGGAACACAGCCTGCCCTGGGTATATGGAGAAATTGAGGCTGTAGAGGAGAGGGGCTGGGCCAGGACACCTGTGAAAGGTGACTTGGGAGGGCTCCTAGGAAGGCACAGAGCTGTCTGCTCTCCACAGGGCATGAGTGGAAAGGATGGGGAAAGAAGAGGAGAGAACCCCGGGTGGACCGGATGGCCACACTGTGAACCCTCCCAGAGACTTTAGACAGAGAGAGGGGCTCCACAACACCCCGGTATTCTGTCTGCCCTCTCTCACCCCCTTCCCTGTCCACACAG
Seq C2 exon
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCCCAACTCTAACCCCACCCACGGGAGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCTCCCCATCCCAAGTCATCCAGCCCTTCTCCCTGCACTCATGAAACCCCAATAAATATCCTCATTGACAACCAGAAATCTTGTTTTATCTCATTTTTTTTCTCACATAAATTGCTAGCCTCCCCGGGGTTCTCAGTGTGGGGTACAGGGAATTCTGCACCCAGTGTGAAAATCACCCAAGGGAGGAGGCTCACAGCCTCCCTGAGTCATCTCCCCAGAGGGTCCTTCCTCTCCCAGTCACCCCTTCTCCAACTCTCCACTGTACCCCTGAGCTACCAGTCTGGCATCAGTTCAGACCAGTCCCACACCCTCCTAAATTTTACTTCTCAATAAATACCTGATCATGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254709:ENST00000532223:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTTCGGAACTGGGACCA
R:
ACATTCTGTAGGGGCCACTGT
Band lengths:
350-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains