HsaINT0079519 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr22:23235880-23238013:+
Coord C1 exon
chr22:23235880-23235998
Coord A exon
chr22:23235999-23237554
Coord C2 exon
chr22:23237555-23238013
Length
1556 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCCCTTCCCTGTCCACACAGGTC
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCTCCTGCTCCAGCCCAGCCCCCAGAGAGCAGACCCCAGGTGCTGGCCCCGGGGGTTTTGGTCTGAGCCTCAGTCACTGTGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
Seq A exon
GTAAGTGGCTCTCAACCTTTCCCAGCCTGTCTCACCCTCTGCTGTCCCTGGAAAATCTGTTTTCTCTCTCTGGGGCTTCCTCCCCTCTGTCCTCCCAGCCTTAAGCACTGACCCTTACCTTTCTCCATGGGGCCTGGAGGAGGTGCATTAGTCTCCGGGTAACCGGCAGGAAGGGCCTCCACAGTGGGAGCAGCCGGATGCAGCCTGGTCCCGGGGCCTGAGCTGGGATTGGGCAGGGTCAGGGCTCCTCCTCTCTTCCAGGGCAGATGTCTGAGTGAGGGACAGAGGCTGGTTCTGATGAGGGGCCCTGCAGTGTCCTTAGGGACATTGCCCAGTGACTCCTGGGGTCAAGGACAGAGGCTGCTGGGGTGGGCCTGGGAGCTGCTGAGTCTCATAGTCTAGGGGAGCAGCCCCAAGAACAGCTGAGGGTCTAGGCTGAGGACTGGATGCCAATCCAGCCTGGGAGGGCCACACGGCCTGGTGACACAGAGGTCACCCCAAGGGGAGACCAATGGAGGGCACAGAGAGGGCTCTGGGTCTAGGCTGCAGCTCTGTGGCCTGTGCTGGGTCATGAGGACATGGGGACACAGAGGGACGGGTGAGACTGGGTGAGGTGCCAGAATCCAACCCTCCCAGGACAGTCACCAGAAAGGAGACAGTCTCTTAGGGCAGAGATGTGTCTGTCCCTGGAGCCCCGTCACCTCTGGGGCCCAGTGTCTCTCTGTTCACGGATCGGCCTCCTGCCTTCCTCAAAGGGCATGTTAGACTCAGGAAATGACCAGAGGGGAGTGAATGAGGGGTGCAGAGAACTCCATGGCTACCAGGTGAAGTTTGGGGTCATCACAGGCTGCTGGGGTGGGCCTGGGGGCTGCTGAGTCTCATAGTCTGTGGGAGCAGCCCCAGGAACAGCTGAGGTGAAGGGTTCTGTGGTCGGGCTTGTGGAGACAGGAAACATCTCAGAGCCTCAGAGGAGCCCTGAGGCTTGTCTAGGTGGAGCCCACTCCTTGCCAGGAGAGCCAAGTGGGCTGGGCTGGGGCAGAGCCCGGTGCCTGTGAGGGATAGGAAGCTCCAGTTCAAAGCAGGCTTGGGTCTCCCCACACACTGCCTGCCAGGACAGTCCTACAGGATGAGCAGGGGACCCACAGTTCACGGAGGAGGCTCTAGGTCCTGGAAGAATAAAGTGGGTGATGGAGGGGGGTATAGGGATGGAAATGAGGGATCCAGGGGTCAAGGCCAGATTCTAAACTCAGACTCCAGAGATCAGAGAAGAAGGAACACAGCCTGCCCTGGGTATATGGAGAAATTGAGGCTGTAGAGGAGAGGGGCTGGGCCAGGACACCTGTGAAAGGTGACTTGGGAGGGCTCCTAGGAAGGCACAGAGCTGTCTGCTCTCCACAGGGCATGAGTGGAAAGGATGGGGAAAGAAGAGGAGAGAACCCCGGGTGGACCGGATGGCCACACTGTGAACCCTCCCAGAGACTTTAGACAGAGAGAGGGGCTCCACAACACCCCGGTATTCTGTCTGCCCTCTCTCACCCCCTTCCCTGTCCACACAG
Seq C2 exon
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCCCAACTCTAACCCCACCCACGGGAGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCTCCCCATCCCAAGTCATCCAGCCCTTCTCCCTGCACTCATGAAACCCCAATAAATATCCTCATTGACAACCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
-IGLL5:NM_001178126:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTTCGGAACTGGGACCA
R:
ACATTCTGTAGGGGCCACTGT
Band lengths:
350-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)