RnoINT0073483 @ rn6
Intron Retention
Gene
ENSRNOG00000025990 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:RGD Symbol;Acc:2321140]
Coordinates
chr11:88389637-88391370:+
Coord C1 exon
chr11:88389637-88389752
Coord A exon
chr11:88389753-88391050
Coord C2 exon
chr11:88391051-88391370
Length
1298 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CCCCTTCTCTATCTGCACAGGGC
3' ss Score
10.2
Exon sequences
Seq C1 exon
GTTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTGGCCCCATAGGCTTCCATCCAAGTCCCAGTTATGGTACGTCTTTGGTAGTGGGACCCAGCTCACAATCCTAG
Seq A exon
GTAAGCGATTCCCATGGTCTCATGATCCAGCTGTCTTAGGGAAGTCCCTTTTTCCTCTGGGGAGTTCTTCTCACCTGCCTTTCCTAGTCTTGTAGTCTGAATGGTACCTTTTTCTGTGAGTGAGGGGAAGGCAAGTAGTTCTAAGGTAAACCACAGGAAAGGTCCCAATAGCTTCAGCTACTCTTCCGAGGCAGATGTCCAAAAAGGGATCAGGGGCTGAGGTTTTCAGGCTGTAGAGACCACTGCACTTCAGCATCTAAACTGAGGCCCAGATGCCCATCCAGATTAAGAAGGCCACATAGTAGGTGCAGGGATATGACTGGTGCCATGATTCCTGCCTTTAAAGATTCAGGTAACCCTAGATAGAAAACCACAGAGGCTGAGAGAAGAATCTGGCCCAGTTTAATCTTCTGCTGGCCAATGAGGTCATAGAGACACAGAAAAGGCTTAGAGTGACCAGGTAACTAGAACCAGCTCCTCCCAGGATGATTACTAGAAAAAAAATGTAGACTGTCTATTGTTCCTGGGGTTTCTCAGGCCTGGAGCCTGTTGTCTAACTTGTCCATCTCCCTCAAATGTCCTTAGAGTTAGATGAGGAATGAGGGAGCAAATGGCGCCAAGTGAAATCAGGAGTCACCAGAGACTTCCTGGGTGGTCAGGGGTTTGCTATCCTTCCTAGTCTGGGAGACGGAGCCCCAGGAGCACAGTCAGAGTAGGTCTTGTGATTACTGTGGACAAAGCATCAGGCCCTTGGAGGAGTTCCTAGGACTTTTCAGGATGGAATCTAATCCTTGGTGAGATAACTAAATAGAATCTGGAGCACAGGCCCGGGAGCCCTTATACAGCAGGCACACCTCAAGACCAACTCCCCAGGACCAGTCTTGCAGAATAAATGAGCAGTAATTCTCAGAGGAGGCTCTGACACTGGAGAAGCAATGGGGGTTGGGGAGCTGCTCCCTGAACTCCCCCACCCCCATAGGAGGCCAGCGTCAGATCCCAATTCAGATTCCAGCTCCTAGTGGCTAGAGAGTACAGATGGCCTTGGTCTTAGTGGGGAAACTGAGATTGCAAGGGGCAGGGTGTGGGTCATTTCACCTGGAAGAGGAACACGGTCTAATGGGGCACCAGGCTGTCTGCTCTCCAGGGGACTCAGGTGGGCAGAGGAAAAGAAGGAAGCATCCTTGATGGAACACTCTGAGCTGTAGTGAATGGCTACAGGGCTCCTGATAAGAGGAGGATGCTTCCCTGTCATGTGGGCTCTCCTATGCCAACTCTTATCCCCTTCTCTATCTGCACAG
Seq C2 exon
GGCAGCCCAAGTCTGACCCCTTGGTCACTCTGTTCCTGCCTTCCTTAAAGAATCTCCAGGTTAAGAAGGCGACACTAGTGTGTCTGGTGAGCGAATTCTACCCAGGTACTTTGGTGGTGGACTGGAAGGTAGATGGGATCCCTGTCACTCAGGGTGTGGAGACAACCCAACCCTCCAAACAGACCAACAACAAGTACGTGGCCAGCAGCTACCTGACACTGATGTCTGACCAATGGATGCCTCACAGTAGATACACCTGCCAGGTCACTCATGAAGGAAACACTGTGGAGAAGAGTGTGTCACCTGCTGAATGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025990:ENSRNOT00000029851:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCTTCCATCCAAGTCCCA
R:
TCCTTCATGAGTGACCTGGCA
Band lengths:
343-1641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]