MmuINT0080909 @ mm9
Intron Retention
Gene
ENSMUSG00000075370 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:MGI Symbol;Acc:MGI:96529]
Coordinates
chr16:16860764-16862637:-
Coord C1 exon
chr16:16862522-16862637
Coord A exon
chr16:16861228-16862521
Coord C2 exon
chr16:16860764-16861227
Length
1294 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTCCTTCTCTATCTGCGCAGGTC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GCTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTCGCCCCATAGGCTTCCATCTAAGCCCCAGTTTTGGTATGTCTTTGGTGGTGGGACCCAGCTCACAATCCTAG
Seq A exon
GTAAGTGGTTCTCATGGTCTCATGATCCAGCTGGCTCAGGGAAGTCCATTTTTGCTCTGGGGAATTCTTACTATCTGCCTTTCCTAGCCTTGCAGTCTGAACTGTAAAGGCAGTAGTAATTCTAAGGTAAATCACAGGGAAAGGCCCTAACAGCTTCATCTACTCTTCTGAGGCAGATGCCCAAAAAGAGATCAAGGAATGAGATTTTTCAGGCCATAGAGACCACTACACCTCAGCATCTAAACCGAGGCCCAGATGCCCATCCAGACTAAGAAGACCACATAGTAGGTGCAGGGACATGGCTGGTGCCATGAACCCCACCTTCAAAGATTCAGGCCACCCTAGATAGAAAACCACAGAGGCTGAGAGAGAAATTTGGTTCAATTTAATCTTCTGCTGGCCCATGAGGTCACAGAGACACACAAAAGGCTCAGAGTGATCAGGTTACTAGAACCAGGTCCTCCCAGGATGATTACTAGAAAAGAAATGTAGACTGTCTATTGTTCCTGAGGGCTGGAGCCTGTTGTCTAACTTGTCCATCTTCCTCAAATATCCTTAGACTTAGATGAGGAATGAAGGAGCAAATGGGGCCAAGTGAAATCAGGAGTAACCAGAGACTTCCTGGATGGTCAGGGGTTTGCTATCCTTCCTAGTCTGGGAGATGGAGCCTCAGGAACACAGCCAGTATAGGTCTTGTGATTACTGTGGACAAAGCAGTAGGTCCTTGGAGGAGTTGGAGGATTTTTCTGGATGGAATCTAATCCTCGGTGAGATAACTAAATGGAATCTGGAGCACAGGCCCCGAAGCCCTTATACAGCAGGCACACCTCAAGACCAACTCTCCAGGACCAGTCTTGCAGAATAAATGAGCAGCAATTCTCAGAGGAGTCTCTGAGCACTGGAGAAGCAATTCAGGTTGGGGAGCTGCCCTCTGCCTCACCAGAAGGCCAGGGTCAGATCCCAATTCACTACCAGGAGGCCTGGGTTAGATCCCAAATCAGGTTCCAGCTTCAAGGGGCTAGAGAATTCAGCTGGTCTTAGTCTCAGCGGGGGAACTGAGATTGCAAGGGTCTGGGTCTGGGTCATTTTATCTGGAAGAGGAACATGTTCTAATGGGATGCTAGGCTGTCTGCTCTCCAGGGGACTCAAGTGGTCAGAGGAGAAGAAGGAAGCATCCCTGGATGGAAGACTGATGCTGTAGTGAATGGCCACAGAGCTCCTGATAAGAGAAGGACGCTTCCTTATCACGTGGGCTCTCCTATGCTAACTCTTATCTCCTTCTCTATCTGCGCAG
Seq C2 exon
GTCAGCCCAAGTCTGACCCCTTGGTCACTCTGTTCCTGCCTTCCTTAAAGAATCTTCAGGCCAACAAGGCCACACTAGTGTGTTTGGTGAGCGAATTCTACCCAGGTACTTTGGTGGTGGACTGGAAGGTAGATGGGGTCCCTGTCACTCAGGGTGTAGAGACAACCCAACCCTCCAAACAGACCAACAACAAATACATGGTCAGCAGCTACCTGACACTGATATCTGACCAGTGGATGCCTCACAGTAGATACAGCTGCCGGGTCACTCATGAAGGAAACACTGTGGAGAAGAGTGTGTCACCTGCTGAGTGTTCTTAGACCACAATCCTCCCTGAAGCCTCAGGGGCCTGGATCTGAAGTGCCAGAAAAAGTTGTTTTTTGTTTTGTTTTTTGTTTTTTTTCCCATTAACCATCTCACTGTCTTTCCTGTGCCTAATACTCAATAAATATCTTACCACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075370-Igll1:NM_001190325:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCAGATCATCCCACGG
R:
TGAGGCATCCACTGGTCAGAT
Band lengths:
356-1650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: