HsaINT1016286 @ hg38
Intron Retention
Gene
ENSG00000128322 | IGLL1
Description
immunoglobulin lambda like polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:5870]
Coordinates
chr22:23573125-23575082:-
Coord C1 exon
chr22:23574967-23575082
Coord A exon
chr22:23573586-23574966
Coord C2 exon
chr22:23573125-23573585
Length
1381 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CCCCTCCTCTGTCCACACAGGTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
GTTCCTGCTCCAGCGCGGCTCCTGGACTGGCCCCAGGTGCTGGCCCCGGGGGTTTCAATCCAAGCATAACTCAGTGACGCATGTGTTTGGCAGCGGGACCCAGCTCACCGTTTTAA
Seq A exon
GTAAGTGGCTCTAACTTCCCAGGCTGTCCCACCCTCTCCTGTCTCTGGAAAATGTGTTTTCTCTCTCTGGGGCTTCTTCCCCTCTGCCCTCCCAGCCTTAAGCACTGACCCCTACCTTTGTCCATGGGGCCTGGAGGAGATGTGTTAGTCTCAGGGTAATGGCAGGAAGGGCCCCCACAGTGGGAGCAGCCGCCTTCAGGTTCCAACAGCAGGACACAGCCTGGTCCCAGGGCCTGGGCTGGGATTGGGCGGGGTCAGGGCTCCTCCCCTCTCCCAGGGCAGATGTCTGAGTGAGGGACAGAGGCTGGTTCTGATGAGGGGCCCTGCAGTGGCCTTAGAGACAGTCCCTGGGACCCCAGGTTCTAGGCTGAGGGCTGGATGCCCATCCAGCCTGGGAGGGCCACACGGGGGCCTGGGGACACAGGGGTCACCCCCAGGGGAGACCAATGGAGGGCACAGAGAGGGCTCTGGGTCTAGGCTGCAGCTCTGTGGCCTCTGCTGGGTCTTCAGGGCATGGGGACACAGAGGAACGGATGAGGTCCCAGAGCCCAGCCCTCCCAGGACAGTCACCAGAAAGGAGAGGGTCTCTTAGTGCAGAGATGTGCCTGTCCCTGGAGCCCTGTCATCTCTGGGGCCTGGTGTCTCTCTGTTCATGGGTCGACCTCCCACCTTCATTTGAGGAAGGGCACCTTAGACTCAGAAGGTGACTAGCGGGGAGTAAACGGGAGTGCAGAGAACTCCATGGCTGCCAGGTGAAGTCCAGGGGCATCAGAGGCTGCTGGGGTGGGCATGGGGGCTGCGGTGCCCCAAAGTCTGGGGGAGCAGCCCCAAGAACCCAGCCGATGTGAAGGGTCCTGTGGTCGGGCTGGTGGGGACAGGGGCGACGGCAGAGCCCCAGGGTGTGTCTGGGTGGAGCCCACGCTTCACCAGGAGAGCTGAGTGGGCCAGGCTGGGGCACAGCCTGGTGCCCCAGGGGATGGGAAGCTCCAGGCCATGCCAGGCTTGGGTCTCCCCACATCCTGCCAGTATAGTTTTGTGTGCTGTGAGGGAGACCCCTAGATTCCAAACTCAGACTCCAGAAACCAGGAAGGAGGGAGCACAGCCTGCCCTGGGTGCACACGGGGAAACCGAGGCTGCAGAGGAAAGGGCTGGGCCAGGACACCTGGGAAAGGTGACTTGGGAAGGGCTCCTAGGAAGGCACAGGGCTGTCTGCTCTCCAGAGGGCTCCAGTGGAAAGGAGGGAATGAGGAGGGAAGGAGAGGCCCTGGGTGGACCAGGCGGCCACACCATGAACCCTCCCAGAGACTTTAGACAGAGAGAGGCGCTCCACAACACCCCACACTCCCTCTGCCATCTCTCACCCCCTCCTCTGTCCACACAG
Seq C2 exon
GTCAGCCCAAGGCCACCCCCTCGGTCACTCTGTTCCCGCCGTCCTCTGAGGAGCTCCAAGCCAACAAGGCTACACTGGTGTGTCTCATGAATGACTTTTATCCGGGAATCTTGACGGTGACCTGGAAGGCAGATGGTACCCCCATCACCCAGGGCGTGGAGATGACCACGCCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGCCCGAGCAGTGGAGGTCCCGCAGAAGCTACAGCTGCCAGGTCATGCACGAAGGGAGCACCGTGGAGAAGACGGTGGCCCCTGCAGAATGTTCATAGGTTCCCAGCCCCGACCCCACCCAAAGGGGCCTGGAGCTGCAGGATCCCAGGGGAAGGGTCTCTCTCTGCATCCCAAGCCATCCAGCCCTTCTCCCTGTACCCAGTAAACCCTAAATAAATACCCTCTTTGTCAACCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128322:ENST00000330377:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765410=C1-set=WD(100=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGTTTCAATCCAAGCAT
R:
CTCCCTTCGTGCATGACCTG
Band lengths:
350-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains