HsaINT0079518 @ hg38
Intron Retention
Gene
ENSG00000254709 | IGLL5
Description
immunoglobulin lambda like polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:38476]
Coordinates
chr22:22887780-22893818:+
Coord C1 exon
chr22:22887780-22888259
Coord A exon
chr22:22888260-22893696
Coord C2 exon
chr22:22893697-22893818
Length
5437 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTGTGCCCGTCATGCCCAGCAG
3' ss Score
4.71
Exon sequences
Seq C1 exon
AGCCGGCTGTGGTGGGAGGCAGTTGAGCCCTGGATTGTGACCGCTTCAGGGCAGTTGGTAGATGCCCCTCTGGGAGAGATCCCCAGGGGTGACAGCCATGGACCCTGGAAGGGCCTGGGCTAGGGACAGGGACCAGAGCCAGTCCAGGGAGAGGACAGAGCCAATGGACTGGGGTGTACTGTAACAGCCCTGCTGGCGAGAGGGACCAGGGCACCGTCCTCCAGGGAGCCCATGCTGCAAGTCGGGCCAGAGGTGCCCCTGAACCTGAAGGCCAATGAGACCCAAGACAGGCCAAGTGGGTTGTGAGACCCCTGAGGAGCTGGGCCCTGGTCCCAGGCAGCGCTGGCCCCTGCTGCTGCTGGGTCTGGCCATGGTCGCCCATGGCCTGCTGCGCCCAATGGTTGCACCGCAAAGCGGGGACCCAGACCCTGGAGCCTCAGTTGGAAGCAGCCGATCCAGCCTGCGGAGCCTGTGGGGCAG
Seq A exon
GTAAGGGGCAAGAGATTCCAGGGGATGTGGGGGTCCTGCAGCAGAGCTGGGAAAGGGTGACCAAGGGGAGACAAGCCAGAGGAGTGAGGAGGAAGGTTAACCCCTAAGAGGGGCCTGGGCTGACACTGGCTTTAGTAATGGGTTGATATTTTGTCCATCACAGATTTGTTTGAATTACTGTTTTTAATATCATATTACGATATTATTTTTCTTGATTTCTGAGTTTTCTGGCGCCACTTAAATTTTCACCAGGGTCAGTGCCTCAATCACCTAGTCCTAGTCCTCTGGGTAGGGAAGGAACAGAGGCAGGGACAGGACATCCACAGGGGGTGGTGGCCACTGTCCCCACAGGGTGCCCAGGCCTGTTCCTCCCCCTCCTCCTCTCTGCCCATGTGCCTCCTGCCCAGTGAGGGCAGGGGCCACTCCCTGGAGAAGGCAGCAAGGGCTTGGTTTGGTCTCCCCCAAGGCTGTCTGTTCACCAACTTGCACATAAATGCTTACTGGGGCCAGGCTCAAGGACACAGGGAGGGTGGGATGAACCGAGGGGAGCTGTCCAGTCATTGGAACAGGCCCACGGCCCATGTTTGGAGCAATAAAGGGAGAGGGGATCTCCCTCTGGGATGATGCCCAGGCTGGTCTCACAGATCGAGGGGCACTGGCTGGTGATGGGTGCCCCCAAAAGACAGAGCAGCGTCAGAGGAGAGGAGAGCACAGGATGAGGCTGGGAGCTCCTGGGTGACTGGGAAGGGGAGGCAAGAAGACCATAGGGTCCGTGCACCATTCCCAGTCCAGGACGAGTCCTTGGATGGATTTAGGTAGATTGATTATCAGAGTCAGATTTGTGTTTTTGGAAAAATCAGCACCGGATTGGAGGCTGATGCGACGCCCGATTAGAGGAGGGAGGAGAGGGGGTGATGGCCAAGTCCAGGGTAGGTGGGGATCCTGGAGGAAGCCGTGCCTTGGGGATGGGGAGGACACTCAGATTCAGAGCACCCAGGGGCCCAGTTTCCTATGAAATGGGAGCATGAAGTTGAAGTGAGGGCTGAGCAGAGGGGAGCAGACACGCTCGGGGACTGTCTATGGGCATTAAAAATGTATAACCATTTTAGCAACAGGCGGCGAGTCAAAAAACAAAGTGTGTTTATCTAAACTGGGCAATTCCACTTCTAGGAATTTATCCTAAGGGTTGGTTGGGGGAATAATCAAAGCTGTAACCAAATCTTTATAACAAGGGTGGTTAGCTCAGCATTATTAGTGATGGGAGAAAACTGGAAAAAATCCAAATATCTACCAGAAAGGGTGTGAAAAAACACAATTGTATTTGGGGGACTGTTGTTGTTTTTGTTTTGAAACAGTCTTGATCTGTTGCTCAGGCTGGAGTACAGTGGCGTGGCCACAGCTCACTGCAGCCTCAACCTCCAGGGCTCAAAAGATCCTCCAGCCTCAGCCTCCTGAGTAGCTAGGACTACAGATGCAGGCCACTACACCTGGCTAATTTTGATTAGGATTATTATTAGTTTAGAGACAGAGCCTCGCTATATTGCTCAGGCCTGTCTCAAATTCCTAAGCTCAAGCAATCTTTCTGCCTCAGTTTCCCACGTGCTGGAATTACAGGCGTGAGCCACTGCACCTGACCCAACTGTGTTTTTAAAGTATATATGCATTTTCAAAAACCTGTCAGAAAATATAGAAAAATGTCAATGGTGTGTCTGGCTGGCTGATGGGATTTCACCTAATTTTAATGTGGCTTTATAATTTTCTGGTTTTGTGAAGTTGTTCACAAAAAGAGACATTTCTTCTAATATAATTTTTAATACAACAGTAATGTACTCATGTGCATTACTCTTTTTGTAATGAGTATATTACAAAATGTAATGACTTTTGTACATTACTCTTTTTTCTTGCCAAAAAAAAAAAAGATTAAGCAGAGAAGTATATAAAGTAAAAGCAAGTGCTTCTGCTTACCATCTCTCACCTCTTCCCAGAGATAGCCACTGTCAGGTTGGTCAATATACTTCCAGAACTTTTCCTGTGTGTGTGTGTGTCCCTGAAAACACACACACACACACACACACACACACACACAGTTGGTGCTGGGATTTTATTTTGCAAAAGTAAGAGCCATATTCTGCATATTACCAACTTTTAATCTATTATTGACACTTTCTGTATCAGTCCATATGGATTAACCACATTCATTGCTTATAAACTTTGTTTTATAAGCAAAGTTTAGATGAGCCAGAATTTATTTCCACTAAAAAATCTAAATGACAAATGATGCTGCAGTGGAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTACAAAGTGCACTTATATATCTCCCCAGGATAGATGCCTAAAAGTGGAATTGCTGGATCAGAGAGAATGTACTTTTGAAATCTTATAGGTAGTGTTTCCAAAAGTCTGTGTCCACTCACTCCGGTGAATGGTAGTGCCTTCGCTCCTACATTCTTACCAATAATGCAAAATTGTTGATCTTTTTATATTCTGCCCATCTGATGAGCAAAAAATTGAATGTGTTTATGGTTTTATTGTGTATTTTATTACTGGTGAAATTATTTTTTATATTTTTATTTATTGGTTTTATTTCGTCTGTGAATTAACTGGTCATCATGTTGCCCGCCTTTCCATTCAGTTGCTTTCATCTTTTTATATATCAATAACATATTGGGATATATTTGGGATTTTAACCACTTGTTTAGTGTATGTATTGTAAATATTTTTCCCTGGTCTGTTTTACGGGTCTTTTGTTTATGGGGTCTCCCACCATAAAACTGTGGTAAATTTTTATGTGTCGAACTGGTTTAATCTTTTCTTTATGGTTTCTGTGACCTCCACCATGTGTAGGAAGTTGTCTTTATTTCAATATTATAAACTCATTTTTCTGTTTTATTCTGGTACTTTTGGTGTATTGGTGTTTTATTTTTTTTTCTTTACTTCCCCTGGAGTTTATTTTTGTGGATGTAGGAATAAGACCTTATTTTCCAAATAGGAAAGCCAATCATCACACATTTGTTGAATATAAATGCAACTTTTCTCAATTACTACATTACTGATTTATTACATTCTTTCTGTGGTTCTCTTGGTTTATTGAGCTATTCCTGCGCCCACCCTGTTTTGATTATTTTAGCTTTATGGTATGTTCGGTAACTGGTAGGGAAAGAACCCGTCATTGTTACTTTTTCTCAAAATAGTCATGTCTATTATCTGTCATTCTTAGAGTTGGACTGCAGAATTGGTTCTCTAATTTTCAAAAATCATTCTTGTGTTATGTGGTAATATCACAGAATATGGGATTAATTTGAGAACTGCTATCTTTATAATGCTCAGTGTTTTTGTTCAGAGACATGATGTACTCTCCATTCACTCAGATAAGTGGTTTAATATTTTATTCATGCAAATCTTGCACACTTTGTTTTTTATTCATAAAGGGTTTGTAAATATAATTTTATTGAAGTTATAAATTTTTTCACAATTTTATATCGTAAATGATTACTGTTTCTATAGCAAGGAACCCTATTAACTTTTCTATGTTGCTCTTGTATCCAGACACTTTAACTCTTGTATTAATTCCAGCAGTTCTTCAGCTGATTCTCCGTGTGTGTGTGTGTGTTTGTGTGTTTAGTTAACTATCACACCATTTGCCAAGAACAATTTTCTCTCTTTTTCTGTAATATTTATACCTCCTTCTCTCCCCCTTTTATGTCATTTCATTGGCTGGAATCTATACAATATGCTGAATAATAAAAGTGAGACTAGACAACCTTGCCTTGTTTCTGATTCTTTAAATGTTTTGCCTTTAAATATGAAGGTTGCTGTAAATTTGGGGAGATATTCTTCACTGAGTTAAGAAAATTTTCTTCAGTAACTTAATAAAAGGCTAAATGTTTGCTTTCTTTATATGAGAAACAAGTGTTGAATTTATATTACTATTATATTAAATTCTGTTTCAAAAATCTTCTGCACATGTCTTAAATACAAATGTATTAAATACAAGCTGCTGCTAAGATGAAAGTTGCTGGCCCCATCACAATGGGTATCTTCCAATGTGAATAAATTGCCTTGGGGAATAAAATCAGATTTGGAAAAACCTGAGGATGGTTGCCATCATAAACTCTTAGAGTGTGACCTGGGTGTTTTTCTTTTTCTCTGTAGGATGTTAATAGTATCTTGTGTCATGCTAGGATGTCTAGGACAGAGGGCAATACAATGAGGGGAAGGCATTCTGCGATGTCCCCAGGCCTCTGGCTTGAAGAGTAACTTGCTGAAGTGAGGACTCTGTGGAGGAGCAAGTTATACAGAAAGAAGTTTAGTTGTGATCTGTTGAGTTGGAGGTGTCTACAGGGCATCCAAGCAGACATAGGTTGAGGAGGCAGAATATATGTGAATCTGGAGCCAAGAAGAGAGGTAAGGGCTGGAAATAGGGATCTAAGACCCCTGGACAGTTGTGAGTGTGCACAATGAGGGTCAGATGCAGAGAAAATTAGGAGACTACAGAGAGCAGAACCCAGGGTGGGGATCTGGGAGTCAGCAGTTGGGCATGGGCCTGGTAGAAAGGGAAGCCAAGGAGGAGGAGAGGGGGCAGTCTCAGACACCAAGGAGGGGAGAGTGACTAGAAAGAAAACCTTCTTGCAGAGACATAGGGGATGGGGAAGAACTGCAGACTGAACTGGGGCAAAGGACTGTTGGCCTTAACCAGAGAGATTTGAGGGAGAGATGAGGCTGAGAGCCAGGGGATCCTGCCATGTCCCAGCATAAAAACAGTACCTGACACAGATGGGTGCTTGGGAGCTGTTGTCGGATGAATGAGTGGACAGATGCATGGATGGACGGATGGATGGAAGGATGATAGATTGATGGACAAACAGATGAACAGATGAATAGCTGGATGGACAACTGGATGGATGGGTAGACAGAATGATCTCAGAGATCAGAAAAAGCTTCATGCACTAAGTGGGACTGAACCGCGTCTCCATGGGTAGAAAGCAGAGGAATCTCCACTTGAGTCAGGAATGACCCAGTGCTCTCAATCCAGGGAGAAAGCCAGCCTGGCTTCACTGGGGACACTTGTGTGGGGGACTCAGAGGCCCTTTAAATGAGGCCAGACGAGGTTGGACAGGTCCAAGCCAACTCAGCACTCCTCTGCCACACTGCACAGGAGGGGATGTGTCACTCAGGGAGTTGCTGGGACCTATGGGTCCCAGTGTTGTCATCAGCACCGACAGCCTCAGAGAGGAAAGACACACACTGGGGTAACTCCAAGGCTGTGTGTGGCACTTGCCTTGGACAGCAGACAGGCACAGGGACACCTCTAGGGGGCTGGCCACCCCCCTGCCTCATGTCTAGGTCCCAGCCCCGCCCACTGCAACCCTGTGCCCGTCATGCCCAG
Seq C2 exon
CAGGCTCCTGCTCCAGCCCAGCCCCCAGAGAGCAGACCCCAGGTGCTGGCCCCGGGGGTTTTGGTCTGAGCCTCAGTCACTGTGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254709:ENST00000532223:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=NA C2=0.090
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains