HsaINT0080507 @ hg19
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10789289-10789868:+
Coord C1 exon
chr19:10789289-10789380
Coord A exon
chr19:10789381-10789772
Coord C2 exon
chr19:10789773-10789868
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
CCTGTGTTTTGTTCCCCTAGGCC
3' ss Score
12.71
Exon sequences
Seq C1 exon
AAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq A exon
GTTTGCATTTTGTTCTTCTATTTGTCTTTTGGTAGAGAATTCCTAAGTTTTAACTTGGCTAACTGTCACCATAAAGATTCCTTAACATTGACGATAGCCGTGCCGAGCTTAGCACCTGCAGCTGCGCAGGTCCTAAAGGAGTGCACCTCAACAAATTCGACCCCAAAAGAGGCTGAGACTGAGTTGGTGGGCTGCTGCTGCTGCTGCTGCTTTGTGTTAAGAGTAACACTCTCTTGTACACGTAGTGACATTGCGGCTGGCCACAGCCTTGGTGGTCGCCAGTGTTGACTGTTTACCCTTGGCAAAGCAGCAACCTGACACTTGTGTCGTTCATGTTGACTTGTGCCCTGGGCGGTGCCTCAGACTGAAGAGCCTGTGTTTTGTTCCCCTAG
Seq C2 exon
GCCAGAGCCAACGGGCTGAAGTCTTGTGTCATTGTGATCCGGGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-ILF3:NM_017620:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.0=100)
A:
NA
C2:
PF075289=DZF=PD(30.8=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)