GgaINT0124576 @ galGal4
Intron Retention
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8916093-8916698:-
Coord C1 exon
chr17:8916607-8916698
Coord A exon
chr17:8916189-8916606
Coord C2 exon
chr17:8916093-8916188
Length
418 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
AACCATTCTGTTTGTTTTAGGCC
3' ss Score
10.06
Exon sequences
Seq C1 exon
ACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
Seq A exon
GTTGGCTATTTGTTCTTACCTTGTTGTTACTGTAGCCTTACGAGGTTTAATTTGAGATATTTAATTTTAATGCCTCTTTAATTTCTGAATAGTCCCTAGTAGAGCAAAGGTCTACAATTCCGAATTCAGTGCTGTACTGTGTAAGGGCAGGCATGACAGGTACACAGCCAACTGGTCTAGAGTTGTTGTGAGACTACAAAAGCAATCTTGACATTTTGCTTCCTTTTCTTTGTCTCTCTATAAATTGAAGTATTTTACTTTCTATAACTGTTCTTATTTTGCATGAGTCTGATTAAGTATTAAGTAGTTATCATAAAAAAAAACCAAAATCTATCCCAGGTCTCTGCATTTAAAAAGAAAAGCAAAAGCGAAGGCAAGGTTTTTTGCAGGTATACTGGAACCATTCTGTTTGTTTTAG
Seq C2 exon
GCCAGGGCAAATGGACTAAAATCATGTGTAATTGTGCTTCGTATTCTGCGGGATTTGTGCAACAGAGTCCCCACATGGGCACCACTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187:ENSGALT00000001802:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGATGAAAGATCCTCCG
R:
ATCCTTTCAGTGGTGCCCATG
Band lengths:
182-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]