GgaEX0001315 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8916093-8922098:-
Coord C1 exon
chr17:8921954-8922098
Coord A exon
chr17:8916607-8916701
Coord C2 exon
chr17:8916093-8916188
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTATCCCATTTTTACCAGTAG
3' ss Score
5.5
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AAACTTACAGAAGAGAAGTATCTCGTGGAGGAGCATGTAAATGAGGCAGCTATTATTATTCGTAACACAAAGGAGCCCAAGCTAACCTTGAAGGTGATACTTACGTCCCCTCTCATTCGAGATGAAGCAGAGAAGAAGGAAGGAG
Seq A exon
TAGACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
Seq C2 exon
GCCAGGGCAAATGGACTAAAATCATGTGTAATTGTGCTTCGTATTCTGCGGGATTTGTGCAACAGAGTCCCCACATGGGCACCACTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187_MULTIEX1-5/7=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
PF075289=DZF=FE(12.1=100)
C2:
PF075289=DZF=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGTAAATGAGGCAGCT
R:
ATCCCGCAGAATACGAAGCAC
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]