GgaINT0124575 @ galGal4
Intron Retention
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8916607-8922098:-
Coord C1 exon
chr17:8921954-8922098
Coord A exon
chr17:8916699-8921953
Coord C2 exon
chr17:8916607-8916698
Length
5255 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
TATCCCATTTTTACCAGTAGACA
3' ss Score
4.78
Exon sequences
Seq C1 exon
AAACTTACAGAAGAGAAGTATCTCGTGGAGGAGCATGTAAATGAGGCAGCTATTATTATTCGTAACACAAAGGAGCCCAAGCTAACCTTGAAGGTGATACTTACGTCCCCTCTCATTCGAGATGAAGCAGAGAAGAAGGAAGGAG
Seq A exon
GTACACAGAGCGTTTTAACTTGTTTTTAAGACTATTCTATCTAAATTCTATCTAAATGCCCTGACTGTGCAGCACAGGGTTAATTAGCAAATAGGTTTTTGATTGTGTATTTTGTACTAACTAGACTGGCTATTGCCACAGTTGGTTACCTTATTTGTTCCGTAAGATGACAATAGTCACTTAATTGTCATGTAACTATGCATTAGTTTTCATTTGCAAGTAATCTTGGTAGTGTTAACTTTGACACAGAATATCTTAGTTCTCCTTTCTTTCAGACTTGCTAGTTGATTCTTGAGCACCCCAGCGCTGCACAGTCTTTTTTTAAATTCAGTCAGTCAAGTGGGATTGGTACATAGTATCTTGACAAACTCTTAAAACAGTTTCTCTTCTTATATACATAACAACCTTCCTGCAAAGCTTGCAAGTATATCCCCATGACCCTCAATTTTTGTTCTTGATACATGTGTATGTTTCTAGCTTTAAGAGTTTCCTAACTTGGATTCAATTGAAGTTAGGGTGCTATAACGGAGTACTTTTGCTTCTGAATTAAACGTACCTCATATCCTTGGTGCAAAATAGATTTAGAAAACTGTAACTTAGTTTCCTTCTATTCCTTCTCCCTAACTGCCTGACCTCCGATCTAGTCATAAACCCCTTTTTAAAGAACTGCTGACTAGTAGCATCGATGAGGCTGGAAACAAAGAGAAATAGAGAAGAGCAAAAGTAGCCATATTTTATTTTTTAAATCATGTCAGTAATTTCTGCTTCGCTTCCCAAGCCTATCCCTAGAGACCTTGCCACTGGATGATGTCAGACCTTTGACCAACTGGCCATTCTCTGTCATGACAACTGAGGCAGCTGGGCCCATGTGGGCTAGGGAACTCCCTGTCGCTCTCTTCCCATTCTAGACTTGCCACAAGTCCTTTGCTTCCTCCCCTCTCCCACATGAGCTACCGATACAATATGAAATGTTGGTCAGTTTCTCTTCATTTTTGTTTGATGCAAGGGCAGGAAGGCTCATTTTGAAAGAAGACTTAGCACTCTGGCAGCAGTTGGATGCAGAGAAATCTTACAAAACAGATGAATGGCAAAGATTACCTAATTTTATTCTCAAATTAGTAACTATGCTCTTTTGCAAGACCACTAAAATGAAACTGCATATTACTTTAGTTGTTCTTCAGCTTTCCATAAGACACTGGTCAGGCTTGTTGTTTCTGCAGCTGATGATGTTTCTAAGGAGATGCACAAAGTGCAGAACAAGTTTTAATGATAAAGCATTTGTCGTATGCCCACAAGGTGATAGTTTTCCATAAAGACTTCCATCCAAGTATGTTCTTGCAAAAAAAAAAGGGATGCCATTGTGGCAGTGAACTCTTAAGACTCCTGAATTCATCTTAAAATGAATGAGGATTTGAAGTTTAATACTTTCCTATATCTTAAATACTCTATTATATTTTCATTGTCTTCAAATATTCCTCAAAACGTAGAACTGTGCTACTGCCTCTGGAGCAGTGTTATGCTATTATTTCTGTAAAGCCAATAAGAATAGTTAAGGAAAATGGATCTTGTTTTAAGGCACAGGTTCTTTGACACTGATTCATCCCAAGTGAAGCATATGTATTGTCTCCCTTTATAAAAGGTATGCAGATGTTGATATGTAAATTGAAGTGGTAAATACAAAAATTCATATTTTTTTTTACAATATTTGCATATCTTTGAGACCCTTTTACCGAGGGAAAATATTCAGAAAAAAAATCAGCTAAAAATACCTTGAGCTCCAAAGAAAATAGTGCCCTTTTTTTCAATACTCCCGGAAAAAACGCCAACCAAACTTAATTACAACCTTGTGCAATTTTAAAAACTGTTCCAAGTTTCATCCATACCTTCTTTTCAATGCCTGTCAGTTTGCCTTTCATCTTTAGTGTAAGACAGGCTGCTTGCATCCAGGAGTCCTGTGAGCCTCCCTCAGAGTGCAGAGGCTACACGAAACTGACCAAGGTTTCACTGTTCGGTGGTGAGCCACTAATCCTCCTCTAACCAAATCAGTGAGGTTAGGGCAATGGGCCTCCTTCTCAGTGCTCCCATCTGTTCTGTAGGAATGCTGTGTGTACCTTCATGCCCTGATGTCAGAATGTATTAAAAACATTTCTGGATTTCTCTTCAGTCCCCACCTCTTTGGAAAAGTGTTCATGTTTGAACTGTGGTGTTTGCCCTATTTGTTTTTGCTGCTTGTTAGCAAAAATAAATAGTGGACTACTGTGTGTATGTGTGCGCGCGTGCATTTCAGTGTTTCTCAAATGGCTATCCATAAAGCTCTGCTTTCTCATGTTAAGAAGCATCTAAACGCTTGCATTTTGCTTCAGATTAAACTGAAACTAATTTTTAGGCATAACATCAAATATAAATTGAGCTCTCCAGACCAGAATGCTGTACCTTGCAAATCAGCTCTTGCTACTGAGCAATAGTTACATAAGTTTATATAATAATAAACAAGTTCAGTTACCAAAGTGGTGCTGGAATCAGCCCTGCTCCATAACTGAGCACCTACTGCATAAACAACCTGCCTTTGCTGGCAGACAGTGATGCTCCAGAACAGAGGAACCTTGCCTCTGTGGAGAACACAACACTCCTTGTGTGGCTGACTTAAGTGAATGAAGACGGCAGCCACTGTAAGGAGAGAGAGTAAATACAGCAAGTGGGGAGAGACTTAGTGAAGATTGCTTCTATGTTGCAGAGTGTGAGCTGATGTCAGGGCTTTATTATGATCTACTTGTTTAAACTCCTTGTATCATTGCTTTTGTTAAAACCACAAGGAAAAAAAAAAAGCTTTGCAACCACACTTGAAAAATTTTGATTGGGTCTCACTTTCCTGACTGGCAGAGCATGAAGAAACATGCCATTCTACTGAGGATGTTGAAAGGCAGTCTGCTACAAGCTGCTCACCCTCTTCACTGCCTGTTCTCTTCATCCTCCTGTTTAATAGAATCTTGCACCAGAAGTTGGCTGACTGCAGCAGCTGCACAAAGTGCTCAGAACACCAGTATTGAGATTGTAATTAGCAAAATTCTCCAAGTTATTTCTAATACAGACCTTTTGAAATAGTCTTATCCCTACTGGAGAATTAAGATTTCAGTTTGCTGAAAACAAATCTTAAGAGAATGGAAAAGCCTTTTCATTCACTGGAATGACTGATGTCATATTCTGTCTATGGCCTTACAGTTTTAAGGCAAAGAAACTTACTTTGTCACTAGATGCAATGTGCTTTAGCAGTCTTGTGCAGTAGACTAGTTTGGCAATGAACTGTATCTTGACAAAAGCTAATGAGCTTGCAGTCAGTCATCTTTGCTATTTCTAACGTTTTAAAATAAGATTCTGATCATTCATTGACAGTAGCTGTTTTATAAAATATGTGAGCTTTAAGCAGATGTTTTTATTGTCCAAAATAAAGGATCTTTTTATGCAACGACACAGATGTATATTTAGTAATTGTGCCATAAAACTACTCCTGAAAATAAATGAAACTGCAAAATTTAGAAGCAAGCTTTGTGTTCCTAAGTGACCTTTTGTTCTCACAGCAATCAAGTACCTTGAGAGTGCAGCTTTTATTTGGAGAACATGCAAGAGGAGTGATTAATCTCAATATTGTAATGGTATTGTTGAGGGCAATAAGAAACAATGCAAATATCTGCTGTGAAGTTCATCGGGGTCAGAAAATAAGCTTATAGCACTTAAGTCTTCTGCTGACAGCAGAACAAGCAGATGCAAAATGCAACTATGAACTATCAGACAAGACACTTCGTTCTGTTCAGTTTTACACTTTTCTTTTTGGCTTTGGGCTCTTTTATCCATTGTAACATAATATGCTTTCACCAGAGTAACCTTCTCATTGGTGGCACAGGAGGTGAAGCAGCTTAACATTAAAGGTGCAGTTACACTTACAAAAAATACCACTGAAAGTAGCCTATGGAAAAGTACTTATAATTGATTAGTAACATTTCAACATATAAACCAACTGTACTTTTTCTCCTAGCACGGTGATATTTTAGAAGTCTTTCTGGATACTGAATCCAGCATAGATTTTGGACTGGATATTGTATTTCATCCAGACATTCATAATCTCTCTTGCAACCTGTAGAGTTGTCCATTAGGAACAATGAAAAGGTTGTTCTAGTTTTTCCAAAATATTTACTTTGAAATAGTTGTGTATTCATGGGAAAACAACACGTTCAAGGTTACAGCTGAGCCATGAATTCATTTTACTTCCACTGTGATGTTCTCATGTCAGAGAAAATCTGAATCCTCTCAGATATATCCTCTCAGATATGTACAATCTGTCATTTGTACAGTTTCCAGAAAGTCTGGATGCTAACTGCCCCTTTTAAGGGGAAAAAAAAAAAAATCAGGGAGGAAAGGACTGTTGTAATATTCGTTGTTACAGAGCTGGACGTGACTGCTACGAGCAGTTTTTTGCATACTGGATTAAAAAAAAGAGAAAGAGATGCGAGAAAAGCGTAAAGCTCAACAGAAATGTCTTGTCTCTAAAATCCTTCTTTGAATTTCATGTTTGTTTTTGGCTGCTGTTGAGAGTGAAGATTTTTACAAGAGGGGACTGCTTCTCAATATGTTAATGATCTGTAATTTACAGAACTTCTTTCATGTTTTGGTTACAATGAAGATTAATCAAACTGTAGAAATTTCTCATTTCTGACATCTTTCTTTCAGTGAATTACTGTTCAGTACTGCTAATACTGTTCAATAAAAAATACTTCAAATAAATTCAATTTTTTTAAAATTATCAACACTTGCATGGGAATAACTTCAGAGCACTCTTACTGTTTTTTTTATATTCTACCCCTCTCATGAAAATCTTCCCCTTGTCAAAAGAAGCTTGTCTCTGAAATTGTGCCACTTTTGTGCACTTAAAAGTCACAAAGAAGGGAAAGAACAACCAAAAGAAGTGCTATATAGCTGTTTTCTGCCCTGAAATGTGTTCTGCATTTTTAATAAGATCCCAGATTGTCTATAGCAGTGGCCATCTTTATTATTACTATTATTCTATAAGGAGCGAATGCCTTTGCTTCTTTTGCACATGTGCACATTTACTACATGTAATGGCTTGTTTAAATTAAATAACAGTGCACTTAAATTCTGGGAGTCTTATTACCTCTTTGAAATGCTGCCGCTCTTTTCGTATTGTGACAGAAACCCCTTGGTCAAATTGTATCTGTCTCTTTTTATCCCATTTTTACCAGTAG
Seq C2 exon
ACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187:ENSGALT00000001802:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
NA
C2:
PF075289=DZF=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]