BtaEX6046037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94321674-94330126:-
Coord C1 exon
chr11:94329982-94330126
Coord A exon
chr11:94322281-94322372
Coord C2 exon
chr11:94321674-94321769
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATTCCATTTTCCCATTAGAAA
3' ss Score
7.21
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AAACTCACAGAAGAGAAATATCAAGTGGAACAATGTGTAGATGAGGCATCTATTATAATTCGGAATACAAAAGAACCCACGCTAACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGAGACGAATTGGAGAAGAAGGACGGAG
Seq A exon
AAAAAGTTGCGATGAAAGATCCTCCGGACTTACTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAGTCATGTGTAATTGTCCTCCGCATTCTCCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTAAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921-'19-18,'19-17,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
PF075289=DZF=FE(12.1=100)
C2:
PF075289=DZF=FE(12.5=100)
Main Skipping Isoform:
ENSBTAT00000029226fB6815
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAATGTGTAGATGAGGCA
R:
GCACAAATCACGGAGAATGCG
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]