DreEX0076152 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9914386-9926209:-
Coord C1 exon
chr10:9926065-9926209
Coord A exon
chr10:9914924-9915015
Coord C2 exon
chr10:9914386-9914481
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCGTTCTTCTCACCGATAGAGA
3' ss Score
7.37
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AAGCTGACGGAGGAGAAGTATGAGGTACAGCAGTGTATTCCTGAGGCCGCCATCTTAGTCTGCACCACAACAGAACCCAAGCTCACGCTGAAGGTGACGCTCACCTCTCCGCAGTTTAAAGACGACTGTGAGACCGAGGAGCAAG
Seq A exon
AGAGCGTTGAGTCGAGCGAGCCGGCGGACCTGTTGGATAGACAGAGGTGCCTGGTGGCGTTGGCCTCTCTGCGACATGCCAAATGGTTCCAG
Seq C2 exon
GCTAGAGTTAATGGCCTAAAGTCATGCGTGATCGTCTTGCGGATACTGAGGCACATGTGCAATAGAGTCCCGGCGTGGGAGCCTCTTAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
PF075289=DZF=FE(12.1=100)
C2:
PF075289=DZF=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGTATTCCTGAGGCC
R:
GTGCCTCAGTATCCGCAAGAC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]