MmuEX6100927 @ mm10
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37626482-37635568:-
Coord C1 exon
chr2:37635424-37635568
Coord A exon
chr2:37627435-37627526
Coord C2 exon
chr2:37626482-37626577
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTATCCCATTTACTATTAGAAA
3' ss Score
6.24
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
AAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAG
Seq A exon
AAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'20-31,'20-29,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.4=100)
A:
PF075289=DZF=FE(12.1=100)
C2:
PF075289=DZF=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGAAAGAGCCAACACTGA
R:
CCATCCTTTCAATGGTGCCCA
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types