BtaINT0142755 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94321674-94322372:-
Coord C1 exon
chr11:94322281-94322372
Coord A exon
chr11:94321770-94322280
Coord C2 exon
chr11:94321674-94321769
Length
511 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
AATCATTTTGTTTGTTTTAGGCA
3' ss Score
10
Exon sequences
Seq C1 exon
AAAAAGTTGCGATGAAAGATCCTCCGGACTTACTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAG
Seq A exon
GTTGGCTTTTTGTTATTCTCTTATTGTTACTGTAACCTTTTGCAGGTTTCATTTGGAACACCTGTCACTTAATGGTTTCTGTGTAATATATAAAATGGGGTGCGCTCTACCTCTTAGTGTTATTGTAGGGGTAAATGATTTAATTTAGGTGTAGTGCCTACTATAGCTTCTACTATAGTTAATGATGTTTAATTGTCATATAATCCTTTTGGACTTAGTACTCTGAATTTCAAATGACAGCTTATAAAATGCAAACATGGGTGAGAAAAGCTAAAAATGGAGTTGCCATGAGGCTATAAAACCAATTCTAATAATATACTTCCTTTACTTTAAACTCTGCCTTCCTAAACCATAATTTTACTACTTTTAATAACTTGAGTTTTCGGTTTGCTTGACAACTTATGAAGATTGACCAATTAGTATTCATTTTAAATAACCTGTCCATGATCAGTGTCCTTAAAATGAAGAATGGATTTCAACAGGGATATTGGAATCATTTTGTTTGTTTTAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAGTCATGTGTAATTGTCCTCCGCATTCTCCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTAAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921:ENSBTAT00000029226:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGATGAAAGATCCTCCGG
R:
CCATCCTTTTAATGGTGCCCA
Band lengths:
182-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development