DreINT0157736 @ danRer10
Intron Retention
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9914386-9915015:-
Coord C1 exon
chr10:9914924-9915015
Coord A exon
chr10:9914482-9914923
Coord C2 exon
chr10:9914386-9914481
Length
442 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
ATTCCTTCTGGTTTCCTCAGGCT
3' ss Score
9.13
Exon sequences
Seq C1 exon
AGAGCGTTGAGTCGAGCGAGCCGGCGGACCTGTTGGATAGACAGAGGTGCCTGGTGGCGTTGGCCTCTCTGCGACATGCCAAATGGTTCCAG
Seq A exon
GTTGGCGCTCACTTCTTCTCATTGTTATTGTAGCCTTATGACCCAAAACTACATGCCATTTTTTCCCCTTTGATTTCCTTGCAGCTTGACACATCATCACAAACGTTTAAGTATCGTAAGGCTACAAAAGCAATTTATTTATTTTTTTTTGCCTGTGTTTTTGTTTGTCCATAACCCGCTTGTCATCATCATGAAGGATTTGTCTAGTGCTTTTCCTGCACCATATCTTCCCTTCTCCCACCCCATGACATAAGCCCTGTCCTCCTCCATGATCATCCGCACAACACGGACCAGAACCGAACCACATCACTCACACAGACCTCAACGTACACACACAAGCACATATAGTCAAGGTGTAGAGACGTACAGTAGGGGGTGAAAGGTTGACGTTGATGCTGTTGCTGTCTGTTGTTTAATTGGTGATTCCTTCTGGTTTCCTCAG
Seq C2 exon
GCTAGAGTTAATGGCCTAAAGTCATGCGTGATCGTCTTGCGGATACTGAGGCACATGTGCAATAGAGTCCCGGCGTGGGAGCCTCTTAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455:ENSDART00000129151:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTTGAGTCGAGCGAG
R:
TCCTTTAAGAGGCTCCCACGC
Band lengths:
184-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]