HsaINT0161121 @ hg38
Intron Retention
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123160367-123161068:-
Coord C1 exon
chr9:123160977-123161068
Coord A exon
chr9:123160463-123160976
Coord C2 exon
chr9:123160367-123160462
Length
514 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
AATCATTTTGTTTGTTTTAGGCA
3' ss Score
10
Exon sequences
Seq C1 exon
AAAATGTTTCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAG
Seq A exon
GTTGGCTTTTTCTTACTATCTTATTGTTATTAAAGTTTGTCCAAGTTTCATTTGGAACACCTGCCACTTAATTGGTTTCTGTGTACTACATAAAATGAGGGGTGCTTTCTAGCTCATAGTGTGGTTGTTGGAGTAATTGAGTTAATTTAGATATGTGCCTAGTATAGCTTCTATAGTTCATGATGTTTTATTATAATTCTTTTTGGCTTAGTATTCTGAATTTCAGATGGTTGCTTATAAAATCAAACATGACTGAGAAAAGCTAAAGGTTAAATTAGGTAGTTGCCTGGAGTGGGGTTGCCATGAGACTACGAAATTAATTTTAATATTATGGTCCTTTTATTTTTAAAATGTACCTTTTTAAGCCTTAATTTTACTACTTGTGATTAATTGATTTTTTTGTTTGCCTGATAACTGATGAATAATTTGCTACTTAGTATTCACTTGAAAGAACTTGCCCAAAATGAAGAATAGATCTCAATAGGGATATCTGGAATCATTTTGTTTGTTTTAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209:ENST00000348403:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGATGAAAGATCCTCCGG
R:
CCATCCTTTCAATGGTGCCCA
Band lengths:
184-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains