MmuINT0154414 @ mm9
Intron Retention
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37482002-37483046:-
Coord C1 exon
chr2:37482955-37483046
Coord A exon
chr2:37482098-37482954
Coord C2 exon
chr2:37482002-37482097
Length
857 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
GGCATCATTTTTTGTTTTAGGCA
3' ss Score
8.66
Exon sequences
Seq C1 exon
AAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAG
Seq A exon
GTTGGCGCTCTATTATTTCTTTACTGTTTCTGTATAGCCATGTGTAGATTATATGTGGACCACTTTTCACTTAGTGTGATGTGTGTGCTATATGAAATGGGAAGTTTGTAGCTCATTGAGTTATTGTCAGGGTGAATCGGTTCCTTTGGATACAGTGCCTAGAATAGCTTTCAGTGTGTGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGGCATTGTACACCACAGGTCAACTTCAAATGTCATTTCTCAGGAGTTATACATGTTGCCATTTTTGGGATAGGGTCTCTCATGGGGTTCTGCAACTCAACACACAGGCTAGTCTGACTGGTCAGCAAGCCCATGGATCCTCCTATTTCTGCTTCTTCAGTACTGATAGTCTAAGTGGCTTTTAAAACACAGGTTCTGAAGGTTGGACTCAAGCCTGCATACTTGCATAGGAAACACTTTATACACTTGCTGTCTCTCCATGTTGTTTTGTTATCATGTAATTCTTTTTGACTTACTATTCTCAATAGTAGAGGGTGGCTTGTAAAATATATAGAAAAGATATATGTTAATATAGTACCTGGAATAGGGTTGTTATGAGTTTACAAAAGGAATATTTCTATACTCCTTTTAATTAAAAACCCACCTTTTTGGACCAATAACTTGCTATTTTTCATAACTTGATTTTTGTTTTTAGTTTGCTTGAATACTAGTATATTATTTGCTAGTTGGTATTCATTTTAAAAAAGTTATCTATGATCAGTGTGTTTCAAATGAGAAATGGATTTCTACAGGGATATTGGCATCATTTTTTGTTTTAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-Strbp:NM_009261:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGATGAAAGACCCTCCGG
R:
CCATCCTTTCAATGGTGCCCA
Band lengths:
184-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: