RnoINT0145349 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21877392-21878612:-
Coord C1 exon
chr3:21878521-21878612
Coord A exon
chr3:21877488-21878520
Coord C2 exon
chr3:21877392-21877487
Length
1033 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
AATTATTTTGTTTGTTTTAGGCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
AAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTTCAG
Seq A exon
GTTGGCGCTTTGTTATTTCTTTACTGTTTCTGTATAGCCATGTGTAGATTATATGTGGACTACTTTCAACTTAGTTCGATGTGTGTGCTGTGTGAAATGGGAATAGTTTGTAGTTCATTGAGTTACTGTCAGAGTAAATCAGTTCCTTTGGGTACAGTGTCTTTCATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTATCATTGTGCAGTAGAGGTCAACTTCAGTGTCATTTCTCAGGAGTTATATACCTTGCCATTTTTGGGAAGAGGTCTCTCACTAGGATTTGCAACTCCCCACACAGGCTAGTCAGACTGGTCAGCAAGTCCATGGATCCTCCTATTTCTGCTTCTCTAATACTGTGATTCTAAGTGACTTTTAAAACACAGGTTCTGAGGGTTGGACTCAAATCTGCATTCTTGCATAGGAAGCAGTTTATACACTGGCTGTCTCTCCATGTTGTTTTATTATCATGTAATTCTTTTTGACTTACTATTCTGAGTAGTAGAGGGTGGCTTATAAAATATACAGAAAAGATGAATGTTAATATAGTGCCTGGAATAGGGTTGCCATGAGTTTACAAAAGGAATTTTTCTATTCTCCTTTTAGTTAAAAACCTGCCTTTCTAAACCATTAACTTGCTATTTTTCACAACTTCACTTTTTTGGTTTGCTTGAATACCACTAAATTATTTGCTAATTGGTATTACTCTAAAAATGTTTTCTATGGGGTTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATACCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATAAATAAATCTCCTATAAAAAAATGTTTTCTATGATCAGTGAGTTTCAAATGAGGAATGGATTGCTACAGGGATATTGGAATTATTTTGTTTGTTTTAG
Seq C2 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
NA
C2:
PF075289=DZF=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGATGAAAGACCCTCCGG
R:
CCATCCTTTCAATGGTGCCCA
Band lengths:
184-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]