MmuINT0081830 @ mm10
Intron Retention
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21393711-21394290:+
Coord C1 exon
chr9:21393711-21393802
Coord A exon
chr9:21393803-21394194
Coord C2 exon
chr9:21394195-21394290
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TCTGCACTTTCTTCCTCTAGGCC
3' ss Score
11.5
Exon sequences
Seq C1 exon
AAACGCTATCAGTCAACGATCCCCCGGACGTTCTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAG
Seq A exon
GTTTGCATTTTGTTCTTCTCTTTGTCTTTTGGTAGAGAATGCCTAAGTTTTGCAACATGGCTAACTTTGACCATAAAGTGTCCATAACATTGACTGTAACCGTGCCGATCTTGTTAGCACCTGCAGCGTGCAGCTGCTAAAGGAACGCGCCTCAATCAATTTGACTTGACAGCCCTGAGGAGACTCATGCTGAGCGGGGGCTGCTTTGCAATAAGGGTAACAGGCTTCCACATATACAATGCGTGAGATGCTGGCCACTTACTTGGTGGCTTTGTACCCCTGCAATCGTGTACCCTTGGCAAAGCAGCACCATGAGACTCAAGTTTTTTCATGTTTGCCTGGTGTCCTCCATGGTGCCCTGAGTATGAAGAGTCTGCACTTTCTTCCTCTAG
Seq C2 exon
GCCAGAGCCAATGGACTGAAGTCATGTGTCATTGTCATCCGTGTCCTAAGGGACTTGTGTACCCGAGTGCCCACCTGGGGTCCCCTCAGAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178:ENSMUST00000067646:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.0=100)
A:
NA
C2:
PF075289=DZF=PD(11.3=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types