HsaINT0082134 @ hg38
Intron Retention
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr15:88639343-88652310:+
Coord C1 exon
chr15:88639343-88639594
Coord A exon
chr15:88639595-88652109
Coord C2 exon
chr15:88652110-88652310
Length
12515 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCACATGTCTTCCTGGCCAGATC
3' ss Score
6.91
Exon sequences
Seq C1 exon
CATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTTGCCGTGGCCAGGCTAGAG
Seq A exon
GTGAGTGAAGGCCCGGCCAGCAGGGGCTTTGGAAATAACCCCTCTCCCACTTCCCTGGCCCCTCTTCCCTGGTGCCCATCTGTGACCTGTGACCCCACTTGTAAGATTTCCCACACTGCTGTTGGGAGAAAGCCGGTGGTGTCTCCATCACATCCTGGAGAAGGCTTCCTGTCTTCAGAGAACCATAGACTCACATCTGGAAGCCGCCTTTGGGGCATCTATCTGGATCTGGTCCAACTTGCCGGTCTTAAAATGGGGAAACTGAGTTCCCCCACACAGTGACTTGGGGTCTACATTCCCCATTCTTCCCTCTACCCCAGGCTGCCACTGGTGAGACCTGTGGGGAAATGAGAGGATTCTTGGCTGAGGCTCTGGCAAGAGGCTTTGGCCCTCCCAGTCCTGGAGAACAGGCTGAGCCTCGGGCTGAGGACCTTGCTCTCAGGCTAGCATTCTGACCCAGAGTAGGCTGTCTGCTCAGTTTGAATCCTGAGTTCGTGGTCCAGGGATTTCCTGCACTCTTGCTCTTAGCTGATTGTGAGGTCATCTCCCCGTCTCACTTTCTGTTTCTCTGAATTACTAAGTGGAAAGCAAAACTTAAAGGTGTCAACACGGTTAGCCACCCCTGGGAAATCTCAGAAGGGCAGGCGAGCTCGTCAGTTTCTAGACACCATGGTAGGGTTTGAGGAAGTCCAAGAAGAACACAGGTTCCTCAGCAGCACACACCCAATCCGTGCCAGGCTCCAGGTGCTGGGGATGAAATGACAACAATAGCTACTATTGACTGAGCACTCACTATGCACTGGCCGCTCCCCTAAGCACTGGCCATTCCTGAGCTCATTCACTCCTCACAAACAGCCCTGCCAGGCAGGTCCTCAGGAACTGTTAACGCAGAGTTAAGAGGGTCAGTTTCAATCTCAGTTCCCATTACTTAACAGCTAAGGTACCTTGGACAAGTTACTCAACCTCTTTGTACCCAGTAAAAGAAAAGAAGGATAATAGTAGTAGCAACTTTGTTGGGTTATTGCGAGGATTGAGAAAGGGTCTAGATAGAGTGCCTAAATAGGTACTCAAAAAAATGTTAGCTATTGGCTGGGTGCAGTGGCTCACATCTATAATCCCAGCACGGTGGGAGGCGGAGGCAGATGGGTGGCTTGAGCTCAGGAGTTCAAGACCATCCTGGGCAACATGGAGAAACCCCATCTCTACAAAAAAAAGTACAAAAATTAGCCGGGCATGGTGGCACATGCCCATGGTCACAGCTACTCCAGCAGCTGGGATCACTTGAGCTCAGAAGGTCAAGGCTGCAGTGAGCCAAGATGGCACCCACTCCAGCCTGGGCAACAGAGCCAGGAAAAAAAAAAAAGTTAACTGTTTTGATTGTTTTTTTGTATGTCTGTTTTATTATTATTTTTTTTTTAACCGGAGTCTCTCTCTGTCACCCAGGCTGGAGTGCAGTGACATGATCTTGGCTCTCTGCAACCTCTGCCTCCAGGATTCAAGTGGTTCTCTGGCCTCAGCCTCCCAAGTAACTGGGACTACAGGCACCCGCCACCATGCCCGGCTAATTTTTTTTGCATTTTTGGTAGAGATGGGGCTTCACCATGTTGGCCAGGCTGGTCTCGCTCGAACTCCTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTCCCAGGCATGAGCCACCGCATCTGGCCATGGTTGTTTACCTTATTATCCCCATATTACAGATGAGGAAACTGGGGCTCGCTTGATTATTTGTTAGGGCTGCCATAACAAAGCACCACACACTGGTGGCTTAAACAACAGGAATGTCCTGTCTCGGGGTTCTGGAGGCTGCAGTCTGAGATCCAGGTGTCGCCCAGGTTGGTTCCTTTTGAGGGTTGTGAGTGGGAATCTGTTCCCTGCCCCTCTCCCAGATTCTAGGGGTTGTTGTCAAAGCTTTGGGGTACCTTGGCTTATAGATGCCTCACTCAGATCTCTGCCTTCATGTTCACATGGCATTCTCTCTGTGTGTGTCCAAACTTCCTCTTTTTATTTTTATTTTTTATTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCAGGATCTGGGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGTTGGGACTACAGGCACGAGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGCCAGGCTAGACTCAAGCGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATGACAGGCATGAGCCACTGCACCTGGTTAGCTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCACTCTGTTGTCTAGGCTGGACTGCAGTGGCACGATCTCGGCTCACTGCAATCTCCACCTCTTGGGTTCAAGCGATTTTCCCGCCTCAGCCTCCCAAGTTGTAGTATAGGTGTCCGCCACCACGCCTGGCTAATTTTTTATTTTTAGTAGAGACGGGGTTTCGCCCTGTTGCCCAGGCTGGTCTTGAATGCCTGACCTCAGGTGATCTGCCCTCCTTGGCCTCCCAAATTGCTGGGATTACAGGTGTGAATCACTGTGCCCAGCCAACTTCCTCTTTTTCAAAGGACACCAATCATATTGGATTATGAGCCCACCCTACTACTCCAGTGTGACTTCATCCTACCTTAACTAATTCTATCTGCAACGACCTTATTTCCAAATAAATCACGTTCTGAGGTATTGGGGGTTAGGATTTTAACATATGAATTTGAGAGAGCGGGACACAGTTCAACCCATAAACTGAGTAACTTACGCTGTTAAGATAGATGGAATATGGGACAACTGCTCAGGAATCCAAACTCAGGCTTACAGTCTCTAGAACTATGCTGTCCAGTGGGGTCCCCAGCAGCCATATGCTGCTAGTAGACTGAATTCAGACCTGGAGTGTAGCTGGTTTGAACTGAGATGTGCTGAAAGTGTAAAGTCCACACTGGATTTTTTGTTGTTGTTTTGAGACGAAGTCTCGCTCTATCGCCCAGGCTGGAGTGTGGCGGCGCGATCTCGGCTCACTACAACCTCCATCTCCCAGGTTCAAGGGAGTCTCCCGCCTTGACCTCCCAAGTAGCCTCCCAAGTAGCTGTGCACCACCACGCCTGGCTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATGTTGCCAGGCTGGTCTCGAATGCCTCACCTCAAGTGATCCACCCACCTCAGCCTCCCAGAGTGCTGGGATTACAGCCATGAGCCACTGCATCTGGCTGAAGCCTTGTATTTAAAAAAGAGACAGGCCAGATGCAGTTGTTCATGGCTGTAATCCCAACACTTTGGGAGGCCAGTGCAGAAGGATGGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAAGATGGTGAGATCTCCTCTACAAAAAAAATAAATAAATAAAATAAAAATTAGCCAGACATGGTGGTGCATACCTGTAGTCCCAGCTACTCGAGGAGGCTGAGGTGAAGTATTGCTTGAGCCCAGGAGTTTGAGGCTGTACTGAGCTATGATCATGCCACTGCACTGCAGCCTGGGTAAGAGAGACCCTGTCTCTATTAAAAAATAATAATAATTAAAATATTAAAAAGAGCCATAAAATGTCTCAATAACTTTTATATTGATTACCTGTTGAAATGATAGTATTTTGGATATGTTAGGTTAAATAAAACGTTAAAATTAATTTCACCTATTTACTTTTTACGTTTTGAAACATGGCTGTTGGGTGATATAAAATTACATTTGTGGGCCAGGTGCAGTGGTTCACACCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGGGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAACCCATCTCTACTGAAAATGCAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAATCCAAGCTACTCAGGAGGCTGACGCAGGAGAATCGCTTAAACCCAGGAGGCGGAAGTTGCAGTGAGCCAAGATCGTGCCACTGCCACTCCAGCCTGGGCGACAGAGCAAGACCCCATCTCAAAAAAAGAAAAAATTACATCTGTGGCTTGCATTATATTTCTATTGGACAACACTGTTCTAGAAGTACAGATTGAGTAGCCCTTATCTGAAATGCTGGGGACCAGAAGGGTTTTGGATTTTGGATTTGGGATTTTTTTGGATTTTGGAATATTTGCATTATACTTACTGGTTGAGCATCCCAAATTTGAAAATCTGAAATTTGAAATGTTCCAATGAGCATTTCCTTTGAGCGTCATGTTGGCACTCAGAAAGTTTAGGATTCTGGAGCATTTGTATTTGGGATGCTGTACCTGTATCAACAGTACAGTGTGGGAACCCTGGAGATGGTCACAGTACATCATCTTGGTTCTGGAAAGACTCCGTGAAGCTGGTGGTATTTGAAAGGGGTGGAGGAGAGTCTATGTAGGGAATTAAGTGGGCCATAGGGAGCCATTGAAGATTCTTGAGCAATGCATGGGAGGATAAAAACCAGTTTCAAGAAAACTAGAATGGGAATACCATGCAGGATAGATGGGAGCGAGAAAAGAGATGACGGTAAGAGTCAGAGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCAGAGGTCGGGAGTTTGAGATCAGCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAATATACAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAATGTAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCTGTGAGCTGGGATCGTGCCACTGCACTCCAGCCTGGGCGACAAAGTGAGACTTAGTCTCCAAAAAAAAAAAAAAAGAAAAGACAAAAAAAAAAAGAGTCAGAGGCCCTAGGGAGCAGTTACAAGGGCCTGCATCATCTTTGGCAGACAGAGAATTGGAGTGAAGAAAACGTTAGGAAAGGAAGAAAACGTTTGGAGAGTCACCAGAAAGGTGAGGGCAACATGAAGAAGAGGTGGGAGTCTGTTCAGGTGCTGATGGGAGGCCCAGGGACACCACAAGGAGCTCCCCGCCCTCAGATTCCCACTGAGCAGTCAGGGTGGGCAGTATGTCCCTCTCCTTCCTCCTTGTCCCCAATTTCCCTCCCCATCAGACAGACAGAAAGGGGCAGAGGAGCCCAGAGCAGGGAGAAAGGAGGCAGTAGAGCAGTACCTCTCCGAGTCCCTGTACATCCAGACCTGGAAAACCGCAATTCCCTGGGCGCCCTTGAGCATTGGCCTCGGGGCCTGGACGCCTCAGTCTTCATCCACATTTGGTGCAGAAATGCTTTTGTTTCTCAGTTAGAGGATATGCCAACTCCACTCTTTAAGCGTGTGACACGGAACCCTGCTCAGACTGGGCACTTGATAGCCACTGAACGATGAGGCAGGGGTTCAAAGACCAGGCAGGTCTTTGGAACCACATCCGGGCTTCTCAGTTCCTGCTCCATCACCTATAGGTTTGTACAATTGTCAGCAAGTTATTGAACCTTTCTGAGGCTCCATTTCCTAATCATAAAAGAGAACTCCTAGTGCCTCCTCCCTGGTCTCATGCGGGTCAGATGCCGTGACATGGACTGTGGCCCTAAGCGCGGTGCCTGGTTCACAGCTGATGTTTGCTAATTGCACCCATGAAGAGAGAAGGGCAGAAACCCAGTCCCCTCTCCGACTTCTCTTGGGAACTGCGGTCTTCGATGCTGACCCTCGTTTTCTGCCGGCTGTATCTTGTGTGCATGCTGCTCTCTCCCACTCTGCTGCCAGAGAACTTCCCTAAACCTGGCTCAGATCATCGCCGCCTCCCCTATTAAAATATCTCCCATGGCTCCCTATTGCCTAAGGTTCCCCCAGCTCAGCACCTAGCAGTCAGGCTCTCCAAACCCCTATCTATCTGCCTTTCTTGCTTTCTCTCATAGCTCAGCCATTGCCTACCATGCATTTCAGCCAACTCCTAGTCTCTCCTATCCCCCATCCCTCTCCCTAGAAATACCATCATTCTGGCAGCCCCAGGCCAGAAGAGACCTTTATGATGCACTTACCCACTCCTGCCCACCATCGCTGCCCCACTGGTCCCTAGCCTCTGGCCCTCCTTGCTGTTGCTGATGCACATCATAGCTCGTCCATTCATTCACACCATCTGTCTATTTCCACAGCTCTTACTATACACTTTATCTGCCCCCAGACTGGAACCTGTGTTTTGCACACAGGTGACTTGAGAATGTTTGTGGGATTGAAGTTGAACTGATTTTCATAAATACAAAAGAGTTCTGGCAGCTGCGTGGAGTAAAATTGTCTCTGCCCTGTGTTGGCCTTTGCTGTTGAGATGTGGTGATGCATAGCCCTGATGGGCAGGGAGCAAGCACACTGTCTTTAGATTGGGCTGCATGTGGATCCAATCCCAACTTTGCCTCTGGATTGCTCTGTGTCCTCTAGCTTGTTGCTCAACCTCTCTGTGCTCCCCTAAGTAGGATCCTCTGTAACACAGAGATGATTAAATAGTACAGGTGTATCCAGCCCTGTGGCCCAGGTGCTATTCTGAGCACGTTTCATACTCCCCACCACAACCCTGAACTAGTACCATCACTCCCATTTTACAGATGAGGAAACTGAGGTATGAGACTGAGTAAGCTGTCCAAGGAAGGGATAGAGCAGAGACTCAGATTCTGGCTCCTGAGCTGGAGCTGTGGTGTTCAGATCCCATGCTCAGTGTGTGTGAATGCACTCTATAAATGCTAAGTGTCCAATGTATGTAAGGGGCGAGGTCCTGCATAGCACATGGGTGGAAATGTGGCCCAGTAATGGTCATTATTTGTCTCTGTGGATGAGGACACTGAGTGTCAATTTGTTGGAGGCTCCGGAGGCAGTTTGATCCCATTTATCATCCATAATGTTTTAATCCCAAAGACAGATCAGGCTCACGGGCCCCCAAATGTGCTGAGGGCCCCCAAAGGGCAGAAGCCTAACAGCCCTTTTATGAGATCCCACAAGGCCAGGTGACACCTCTCAGGTGAGTCTAGGGTTGGCCAGCCTTTGGTTTCATGCAGGCATTATTTTCTTTCTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAGTCTTGGCTCACTGCAACCTCCGCCTCCCAGGCTTAAGCAGTTCTCGTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCCAGCTCATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCCGTGCTGGTCTTGAACTCCTGGCCTCAAGCAATCCTCCTGCCTTGGCCTCCCATAGTGTTGGGATTATAGGCATGAGCCACTGCGCCTGGCTATGCAGGCATTTTTCAAAGGCCCCTCACCTCTCCGTCTCCTCCCAGTAAGGAGTAGTGAGTGTGCCCAGCCAGCAGCCAGCAATCAAGTAGCCCATGGTGGCCAGGAGGCTCCGGGGAGTCCCAAGTCCACCCAGGAGTGCTTTAGGCCACTGATGTGAGTGGGACCCCCCCCCCACTCCACCCCTTTTTATTTATTGTAATGTGGCGACATTACTTTTATAATGTAAGTGCTTATGATCTTCTGACATCTCTGTGTCTGACCATTATATAGAGGGGATATTTAGCAATGTTGGGAGACATTTCTGGTTGTCACAGTGGCCGGTATCTAGTGGGTAGAGACCAGAGAGCTCCCAAACATCTCACAATGCCCAGGGCAGCTCCCTCCCCTGCCACGCACACATAACAAAGAAGTATCTGGCCCCACATGGCAACAGTGCTAAGGCTAAGAAACCCTGGTCTATAAGAGAGCGCCACAAATCAGACTGTCAGCACAGGAGGGAATCCATGCACTGGAGACTGGCGTCCAGAGAGGGGCAGTGATTTGCCTAAGGACATACAGGAAGCTATGATACAAATCACTGCTCAGATTCATGGGTCCCACCTGGCGAGTTAATGTTTTTCTTCTTCCTTTTTAAAAAATCTAACAGTAATTTTTAGTAACTTGTAAATCAGTTTTGTGAGTGAATTCTCTTTTAACGTCAACCCAGCATAAGGAGGGGCATCCACCCTGAGAAGCACCGTGGTCGCGGGCACAGATGCAGACAGAAGGGAAGTCATGGTAGCTTGTGAACAGGGAGAGGTTTCAGCTGTAGCCAGCCTGGTAGCCCTTGCACAGGTGGGAGTGTCCTGTTGGGGCCCTGCCACCTGGCAGGTCCCTCTGGGTCTCAGCCAGATGAAGGAGGAAGGCTTCAATATCCAGATTTGCCCCAGGGTAAGTGGCCTTGTGGGAACCAGGCACTAGCCGGGGGGCGGGGACACCAGGGGAGCTTGGCAGGGGACAAGAGCAAAGAATGGGGCTGGAGCCACTCCAGAAGGTGATAGTAAGGGACCTGTCCTCTGTAAGAACAAGATTCTTCAGGGCCCCTTACTCATAGCCTCCTCTCCTGGCAGCCAAGAATGAATGAATGGGTACGTGAACTAGTGTATAATGGATGAATGAATGCATGGTAGAGGCAGCAGGCTCTGGACTGCTCAGCGGGATTCAGTGCAGAGATGTGCAGACTTGTTAGATGGGAAGAATCCCCTGAAACAGTTGCTGACACCCCTCCCTGGATATTTCAATTCAGTAGGTCTGTGTAGGGCCTGGCCCTCCTGGATTTTTGGATCAGGCACATCTGGGAAATACTTGGAGTAGAGTGGAAACACAGTGGAAGGTGTGTGCAGGCAGACAGCCGCACCTGGTCTGGCACTCCCCTGCTTGTGACCTGGGTGCACACCGCCCTGCGCCCCGCTTTGCTGGCGGGTCAGATGGTATGGAAGTCACCGCCTTGCACCGTTATCATTGTGTGCCTGGTAGTGCCCTGTCCCTTGGTCCTTGTGCTAATAATAACAACTACAGTAACAATGATGGGGTCAGGTGGATCCAGACACGGCACTGCAGCTTTCAGCTGACTAGCTGTGTGACTTGGGCAAGCCCCTTAATCTCTCTGATCTCGGGCTCCCTCCTCTGTAAAATGGAATTAAGAATAACCTCATTGAGGAGCTTCCTGAGGAGGTAAGGAAAGTGCCTGGCACAGTGCCAGGCTGCTAAGAGATCAATAAATGTCCCATCCCCCAGCCCCACCCCAGTTCTTTCCAGGAATTTGAGAGACTCCTCCCCCTGTGTTTGAAAGTGGCAAAGTCTGGCACACTTGCCTCATGACACTGACTCAGGGCAGGTCCTGTGGCCAGCAGGTCACACAGCCCCGAGGCCAGCCTGCCAGTGCCTTTCTCCGACTCCTGGGCTCCAGCAGGTGCCCGACTCCTTCCCTTTTCAGACCTGCCTCAGTCTGTGGAGCCCTGGCTGCTAAAGGGCCACTCAAGCCTCACCAGTCTGGGCCCTCACCTTACAAATGGGAAAACTGAAGCCCAGAGAGGGTCTTTGACATCCCTGAGGTCACACAGCAAGTTCCAGCATCTCTTCCTTCCCAGAATCTTTGTCCCAAAGAGTGGTGTCTCTTTGCTAAATAGATGGTTCTGTTCTTTCCCTTCTTCCTCTTCTTTCCTCGGCTTGTCCTCTCCCTCTTATTCTATTTGTCTCGTGGTGAGTCACATAGTGCCTCATGTAGACCCCCACTTCCCCTCTCCAGACTCTCAGGCTCGGGAAGTGATGGGTTTCCTGGGAATCCACACCATGATGACTCGTACCTTCTACGTCTGTGCCCAGCTGTGGCTGCCTCTGGGATGGTGGATGAGTTCCTTCAGGGCTTTGTGTGAACTGGGCCTGAGCCAAGCCCCTAGATGGGGAAAACAGGCCACATTGTTCAGGAGCACAAAGGATGTTAGCAAGAAAAGACACATGACCCATGGCCGCCCACACACCCACATCTCTCCACGCCCCGTGCCATTTCTGCCCGCCGCTGCGTGCTGGGTGGTTTCCTCTGCACAGAGTTTCCCTTGAGCTGCTACTCTGAGGTCGTGTGCCTGTTGTCATCTTTTAAAGCCTCAGTTTTGTCGCCATTTCCCAGGTGACCTCTAGCACACTCAAGTTTGAGAAGCGCTGGTGTGGTTCAGGAGCAGCGCCCCTTCATTCTCCAGCACACTCTCCCCAGTCCTCTAAGTCGAGCGTGAGCTCTGTCCAGAGAAGGCCTCCAACCAGACCATGTGGACCGCGGGGCAGGCTGGTGACACTGCCTGTTGACAGTGGATGGACAGACTGCTTCCCGCATAGTGACCCTGGGCAAGTCACATCTCCTCTCTGAGCCTCAGTCTCCTGTGGTTGCCAGGGGAGAACATGTAAAAGGGAACACATGATGTTCCAGGAGGCCGCTGGCTATCTAGAAGGAGAAGCAGGCTACGGGGAAGGTGTTAGGCACCAGAAGGCTCTTTCCTGGTGTACAGGCTAAGGTCGTGGGCTACATGCAGAGAAGGAGACGAAGGCTGTCCTAGAGCTGTCCAAAGTGGGCCTGGACTAGCCACGAGCCGCCCCTTTCCCTAATAGAGCTCACATCTGTTCTATTTTCAGGTCCCCTTCCCATCCTCTCCAACGGCAGCTGAGTGAAAGCAAGCTGACTGGCCTGTGTGACCAGAGCAGGGCAGGCTGTCCATGTGGGAGGCGAGGCGAGGAACGCGGGGCTGGGGCAGTCACAGCTGGGCGCCTGGGCTGCTGGAGGCCTGGAGTGGTCGTTCACTCTTCTGGCTCAGTGTGGCAGTGGCAGGCGGGCTCTGGATTCATCCCACTGGCTTCAAGGCCTGGCTTTGCCACTAACTAGCCGTGTGACTGTCCCAGTTATCAAATGGTGCTTGGCAAATCACACCAAAACTTACCGGTTCAAACAATGTCAATACTTATTTCGCTCGGCCACCTGCAGTTTGGGCAGGTGCTCTGCAGCAGGACAGGCCGTCAGTTAAGGCACCTTGAAGGCTGGGGGCTGGAACCATTGGAAGGTTTGCTCACCCACCTGTCTGGTGGCTGGTGCTGGCCTGCCTTGGACACATCACTATCTCGGTGGCTTTTCCCCGTGGTCTTTCCAGCATGGTGGCTTTGGGGTGGCCAGACATTTATTTATTTATTTATTTATTGAGACGGAGTCGTGCTCAGTCGCCCAAGCTGTAGTGCAGTGGCACGATCTCAGCTCACTTGCAATCTCCCTCCCAGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAACTGGGAATAGCCACGGCGCATGGGTAATTTTTGCATTTTTAGTAGAGACAGAGTCTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAGGTGATCCACCTGCCTCACCTCCCAAAGTGCTGGGATTACAGACGTGAGACACCGTGCCTGGCTGGTGGCCGGACTTCTTATAGAATTGCGGTCCCAGAGAGAAGTCAGAAGTCATACAGGCCAGCCCATATGCAATGGGAGGGGAGTTTGATTCCATCTTTTTTAAGAAGAGTGTCAAGGAATTTGCAAACTTGTTTTAAAATCATCAGAGTAAGCCTGGGCATGTCACTCCTCTGCATTTCAGATATTTCCTTTGTAAAACTCAGTTAAATGCAGTGCTCCCTCCTCACTGTTAGTTTTCTGTGGCTGCCGTAAGGAAGCCATCAACTTAGTGATTCACAGCAACACAGATGTCTTCTCTTACAGTTCTGTAGTTTCGAAGTTCAGCGTGGGTCTCACTGGTCTAAAATCAAAGTGTCAGTGGGGCTAGGTTCCTTCTGGATGCTCTGGGGAAGAATCCATTTCCTCGCCCTTTCTGGCTTCTAGAGGCTGCCTGAATACCTTAACTCACGGCCCCTCCCTCCATCTTCAAAGCCAGCAACAGCCTGTTTTCCTCATGTGGATTCACTCTGACCTCCACATGTAAGGAGGCTTGTGATTATGTTGGGACCACATGGGTAGGCCAGGTGATCTCCCCATTTGAAGGTCGACTGATTAGCAATCTAAGTTCTGCCCGGAACTTTAATTCCTCTTTGCCAGGTAATGCATTCACAGATCCTGGGGACTAGGGTGTGGACATCTTTGGGAGGTCATTATTCTGCCTGCCATAATAGAATTGTTGGGAAGATTAAACAACATAATATACATGACGTATGTTGAGGCACGCTTGGCACCTGGGAAATACTCAGGATGTACTAACCATTGCTCCTACACAGTTCAGCTCCTGAAGGAGTCCAGGTGGGCTTTTGGCACAGAATGAAACTATCAGGTGTGAGGAGGGTCCTAGTGCAATCTCTTCTTTTCAAAGATGATACATTTGAAGCCCAGGGAGGACTGATAATTTGCCCAAGGTCACACAGCCAGTCAAGGAGGGATTGCTCCCTTGCCAGCCCCAGCCCCACCCAGAAGATGCTGGGTCATGTAGGGGTGGGCACATGTCTTCCTGGCCAG
Seq C2 exon
ATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCCCTGCGGGTGCTGAGTGAGCGCCTCCTACACAAGAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183:ENST00000306072:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(43.9=89.5)
A:
NA
C2:
PF0092919=RNase_T=FE(42.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development