RnoINT0075723 @ rn6
Intron Retention
Gene
ENSRNOG00000054561 | Isg20
Description
interferon stimulated exonuclease gene 20 [Source:RGD Symbol;Acc:1306407]
Coordinates
chr1:140602542-140604904:+
Coord C1 exon
chr1:140602542-140602817
Coord A exon
chr1:140602818-140604703
Coord C2 exon
chr1:140604704-140604904
Length
1886 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CAACCTGTCTTCCTGGACAGATC
3' ss Score
10.15
Exon sequences
Seq C1 exon
CCCCATCCTCCGGACTTCCTGAGGGTCTGAGGAGCATGGCAGACAGCCCAAGAGGTGGGTAGGGCATTGGTAGCCATGGACTGTGAGATGGTGGGGCTCGGGCCTCAAAGGGTGAGTGGCCTCGCCCGCTGCAGCATTGTGAACGTCCACAGCGCAGTCCTCTATGACAAGTACATCCAGCCTGAGGGAGAGATCACGGACTACAGAACCCAAGTCAGCGGGATCACGCCTCAGCACATGGCGAGGGCCACGCCATTTGCTGAAGCCAGGCTAGAG
Seq A exon
GTGAGTGAAGGGCCATGAGTCAAGTCAGCAGAGGTTGCAGACACCCCCTCCTTCCTCCTCAGCTCCTTCCTGAGGTCTGTGGTCTGCGACTCTCCCGTGAGACATTCCTCACAATTTTGAGGGGAGAACTCCGGGTCTCCCTGTCACAGCCCTCAGCTAGCTAGTTTCCCCTTTGGAGCGTCTATCTGGTCCAGCTTTCCGGTCTTACGATGGGGACATTGGGTCCCCTCTCTTCCATGCTACGCTGCTCTGGTGAGCCTGGGAGATGTTCTGAGGCTGAGTTAGTTCTGACGCAGCAGCCAGAGGCTCCTTGGCTGAAGGAGACTGTGTTCCCAGACTACGTGCTCTGGGTCACTGAAGCCCAAGGTTCTTACCCTTCAGCCTTGTGAGTATGTCTTCCAGACATGTAGGACACGGAGCTGAGCCATGCTAAGGGCTGTCCATCCTCCTCCTGGGCTGCCAGATGCCTGGATCAGGCTGGCTCATCAGCTGCGTAACAAGCAACCAGCCTCTGCCACTAACCCCCACCCGCTGTGGAAATCCCAGTACCCTGATGGTGCTTAGCAAAACACCCCCAAATAGCCCGAACATGAGTAGCATTTGTCACACTGATGCATCTGCGGTTGGCAGGGACAGGTAGAGGGGCAGTGTGTCAGGGCCAGTGGGCAGGAATTAGGTGTAATATTTGCCCGCCCTACGGGATTTTTCTAGGCTTTTCTCCGTGCATGACTTTCCTTCAGGGTTTTCTCAGCCATGGGAGTTCCATTCCCCATCTTCTGTTTGCCTACTGTTAAGATAGGGTCCCATGTAGCTCAGGCTGGCTTTGATCCTTCTGCCTCCATCTGCCCCAAATCCTGGGCTTCCAGACATGTGCCATGGTACCCGGTTTATATGGGATAGAACCTAGGTCCTTGAATGCTAGGCAAGCATTCTGCCAGTTGACCCACACTCCAGTCTTAGTTATCAATCTTTAAAGAGGACTACTACGGTCTTTGCAAATATCTACAATGGTCAGAGGCACTTTGGGCACAATCATTCACTCCTGAGGATCTCCATTGTTCTCTGTAAGGTCCTGCTAAGTCGGGCCTCCTTCCTAACGGAGCTAGTTTTTGTAGCCTCTGAATCGACCCGCCGACTTCATGTGTTAAGACGAGGTGGATTTATTATCTTAGTGTTCTTCAAGGCCTAATGGGACTAAAGCTAAGGAATCTGCAAGACTGGCTCCTCAGGCTCATTCCCAGCTTCCGGAGGTGCTGGGACACCTTGGCCTTAGTCCTTCCTCCATATTCAAAATGACCAACAGCACACAAATTCTCTTCATAAAGAACCCCTAGCCTTCAAGAGTAAGGGCCCTGTGATCAGGGGGACCTGTTCTGGAGCTGTCCCATCCTCTCTGTCCAGTGTCAGGGACTGGATCTTAGAATGTCCCAGCTGAGCTACAATCCCAGCAGAAGTGTCCCCTTTCTAAAATACCATCATCTGGCTAACAATGTAAGTTCCACATGCACCTTTGCCCCGCCCCAACCCCATCCCCGATCTAGGGATGTAGTCACGGATTCTCCTCAGAGGGGTCGGGATAGCGTTCAGGAGGTCATGATGTGCCCCGCCACAGCCGAGTTGCCAAGGAGATTAAAGGATGCAGTCTGCGTGCTGTTTGTTCACAAAGGCCCATCCCATGAGCCACGGGAGCAGCCCAGGGTAGGAATCCTCACAGACTAAGACTGCTTTGAGAAGGGCTTCGGGCCCTGCTTCCCACCCGTGACGAAGGATGATTTGCCCAAGGTCAATTAGCAACCCCAGGAGTGGCTACTATGGGGAAGGGGGAATCCCCAGGCCTGGAGAACCCAGGGTGGACAGTGTGTGAGACAACCTGTCTTCCTGGACAG
Seq C2 exon
ATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCATGACTTCAGTGCCCTGAAGGAGGACATGAGAAAATACACCATCTACGACACGTCCACAGACATGCTGCTGTGGCACGAGGCCAAGCTGCACTGCTACAGCCGTGTGTCCCTGAGGCTGCTGTGCAAGCGCCTGCTGCACAAGAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054561:ENSRNOT00000085570:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(43.1=98.5)
A:
NA
C2:
PF0092919=RNase_T=FE(43.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGAGCATGGCAGACAG
R:
TGGACGTGTCGTAGATGGTGT
Band lengths:
357-2243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]