GgaINT0027089 @ galGal3
Intron Retention
Gene
ENSGALG00000006736 | AEN
Description
NA
Coordinates
chr10:14820728-14821902:-
Coord C1 exon
chr10:14821345-14821902
Coord A exon
chr10:14820929-14821344
Coord C2 exon
chr10:14820728-14820928
Length
416 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AACCCCTCTGACAATTCCAGATC
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTGCGCCCACCCCAAAAGCGCACCCACGGTCCCGCCGGGCCCCCCAGCCCCAGGATGACGCCGCAGGGTCCTGGCAGCAAGAAGAAGAGCCGCAGGCACCAGCGCTTCATGGAGCGGCGGGCGCTGCTGGAGCGGAGGGGGCTGCTGAGACCCCGCCATCGGTTGGGCACTCAGGGACCCCCGGGTGGGCTCAGCAGTGTGACACCACGCGGCTGGAAGGTCTCCAAGCTGGGGCTCTCCGTGTCCCCATCCGCCTCCCCGAACGACATCGTGGGCCGCTGCTGCGGGACGTCCGTGGGTAACGCCGTGACGGGGGTCCAGCTTTGCCCGCCACGTCCCAACAAGTATGTGGCCATTGACTGCGAGATGGTGGGCACGGGCCCGCGGGGCAGGCAGAGCGAGCTGGCACGCTGCTCCATCGTCAGCTATGACGGGGACGTCATCTATGACAAATACGTCCTGCCCCTGCTGCCCGTCGTGGACTTCCGCACCCGATGGAGCGGCATCACCAAACGGCACATGGAGAGCGCCATCCCATTCCGGGCCGCCCAGGAGGAG
Seq A exon
GTGAGGTCCCGGCACTGCGAGGGTTAAGGGCTGACGTTTGGGTCGGCCTCGCGCAGTGAGTCTGGTGTGTGATTGCATGGAATGGTTAAGGTTGGAAGTGGAGATCACCCAGTCCAACCCCAGCCCACCACCCCCCCCCCCCATGCCCACTGACCACATCCCTCAGTGCCGCAGCTCCGGGTGTCTTCAACACCTCCGGGGACGGTGACTCCACCACGTCCCTGAGCTGCCAGTGCCACTGCATCGTCGCTCTGTGAGAAGAACAGAAGCTCAGTAATGGGGCTCACTCGTTGCTTCTCACTCTTTAGAAACCAAACAAAGTAGACCTGAAGGAACCGCGCTGAATGCAGAAGCGGTTTATTCTATACAGCGCATCGTTTGCTGCGCTGCCCATCTAACCCCTCTGACAATTCCAG
Seq C2 exon
ATCCTGAAGATCCTGAAGGACAGGATCGTGGTTGGGCACGCCATCCACAACGACTTCCAGGCCCTGAAGTACTTCCACCCCAAGGAGAGGACGCGGGACACCAGCCGTATCCCACTGCTCAACCAGAGGGCCGGGCTGCCCCCTGGGGCCAATGCCTCGCTTAAGAGCCTGGCCAGACACCTGCTGCAGAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006736:ENSGALT00000010894:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=41.1)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCCAACAAGTATGTGGC
R:
CTGGTTGAGCAGTGGGATACG
Band lengths:
352-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]