MmuINT1003930 @ mm10
Intron Retention
Gene
ENSMUSG00000030609 | Aen
Description
apoptosis enhancing nuclease [Source:MGI Symbol;Acc:MGI:1915298]
Coordinates
chr7:78902230-78906043:+
Coord C1 exon
chr7:78902230-78902830
Coord A exon
chr7:78902831-78905842
Coord C2 exon
chr7:78905843-78906043
Length
3012 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCTCCCCTCTCCACTCACAGATC
3' ss Score
12.06
Exon sequences
Seq C1 exon
CACACTGCCCCATTGGCAGACAGCCTCCAGAGCTGTTCTTACCCCAACCTGTGAGCTGGCTGACATGGTGGCAGGGGAAGTCCCCGAGTCTACTCAGTGTCCATCTCTCACCAGCCTGAATACCAAGGATGTGGTTCGGAGAAGACACAAGAGGAGAAGCCGGCAGCACCAGCGATTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGCTGTTGAGCACGGCACCAGGGCCAGGTCTCTGCCTTCTGCCTTCACCATCACAGATGCCAGCGGTCACAGAGGCTTCGGACAGCAGGAGGCAACGTCCCAAGGCCAGGTCCGGCAGCAATGGCCTGTGCAGCAAAAAGTCTGTCCCCAGAGAAGCTCCAAGACCTGGGCCCATCAAGTGTGTGGCCATTGACTGTGAGATGGTGGGTACGGGCCCCCAAGGACGGGTGAGCGAGCTAGCCCGCTGCTCTGTGGTGAGCTACAGTGGTGACGTTCTCTATGACAAATACATCCGGCCTGAAATGCCCATTGTGGACTATCGCACCCGCTGGAGTGGCATCACCCGCCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAGGAG
Seq A exon
GTAAGGACCCTGGGTCTTATGTGGCCAGAGTGGCAGGCTGGGGAGAGAAGCCCTGGTTCGAGGCACCACTTTGTATCTGGGGAGTGAGGGGCCTTGAAAAGTCACTTTCCGTCTCCAGACATGCAGTGCCTTTCCCAGAGACTGGATTAACATAAACCCCAGGGGCTGCCACTCTGATGGCTTGCCAGGCTGGTAGGCAAGGGACTGCTTGCAGAAAGGTTATATGACAGGTAAGGGCACGATAACTTATAGAATGTTCAGAATCTATAGACTTTGCCTACAGTCTTGTCCCATCTCCTTATGGTTCTTCAGTACTTGGAAAAATGACTAGTAGTTGGGATTCCCCTATATATTAGGAATCTGAAAAGGCATTTGGCTGTAGAAACAGCGAAAGCCTTATAAATGGACTAGAAGCCTTGCCCCAGGGTCTTCCATGAAGACTCCGTTCCCCTAGATCTCTAGGGCTCTACCATGGGTGTCTAAAAATCATGGTTAAGCCAGCTTGTCCTATAAATAGGCCCCAAGGTTGATTAATCACCTGTTGGGTAATAGCAACAGAACCAGCCTGGTGCTGGGAAGGGAAACTCAGAAAGGCTTGCAGTCCCTGTCTTCAGGACTCTGCCCCTGGTCATCTGTACAGCGACTCCTGTCCCTCCACACCTGTTCTGTGCCACAGGGCTTTTTATAAGGACATGGTCTTTAGGCACAACACTCGAAAGACTTGGTGCTGCCACAGAAACAGAGAGAGACCTAATGAAAACTGGCACTCCAGTTTTGCCTGTGGTTAGGAAATGCAATGGGTAGAGGGTAACCAGAGCCATGATTAGGAAAGGCCTGAGATGGCTTGTGGAAGGAAGGGCAGGAGGACGTCACTGCGGCTGTGTGAAGTGGGGCACTGAGTCTGACACTGTATTAGACAGGTATGGCTCAGTGCCCAGGCAAACAAACCAATTGCTGGCAGGTGGTGGAGGTGTGTAGTGCTGTGTGCTCCTGATTCTGTTCAGCTGGCAGTAGTTTTCTTCATAAATGGAGCATTTATTCAGGTGTAAAGTTTGGCAGAAACAAAGGTGAAATTCACATTCTGAGGTTGTGTCCTATCACAGTTGTATTGGAACAAATTCACTTTCTCAACACAAACATTAGAACAGAACTACTTTTTTGGGGGTGGGGGGTGGTGGTGTTTCTAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTGTAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCTGGCAGAACTACTTTTTAATGTCTCTGGGTTATTGGGGTCAGGAAGGTTTGGGAAATTCTGATAAACCTCATCCTGTGACCTCTGTCATAGTGTGCTGGCTAGACATAACCCAAAGTCATTTAGGAAGCAGGAACTAAAGTTAAGAGAATGTCCCCACCAGACTGGCATGTTAACAAGCCTTGGATGAATTTTCTAGATGTGGGAGTGCCCAGATTCCTGTGGGCAGTGCCACCCTGGGCTTGTGGTCCTGGGTGCTGTAAGAACGCAGGCTGAGCAAGCCAGTAGGCAGTACTCCTCCAGGGCCTCCACATCAGCTCCTGCCTCCAGCTTCCTGCCCTGTTCGAGTGTCTTCCCTGAATTCCTTCAGTAATGGAGCTGAAAGATGAAATAAACCCTTTCCCCACTTGTGGTCATGGTGTTTTTACCACAGCAATGGAAACCCTAACTAAGACATTGCTTTGGAAAGACCTGATCATGAGTAGAAGCAGTAGGAAGGAAAGCCTGCGGTGAGCCCTCCAATTCTGATCCCTCCTGTTGATGGATGTTTGTGGTTGGTGGTGATCCCTGGGCAGGCTCGTTTTCTTTCTGCTCACTTAGGCTAGTGTGGAGTAGGTTTGATCTCTTCCCCTCTTGGTGGCAGGTGGGGTGTGAGACAGGGTGATCCTATCACAAGTCTGCATGCATCTTATTCAGGCTACAAAAACTGGGTTCCGTGGTTCTAGGTAGGCATCAGAAGGCCAGGCGTTAGCAGGTGCTCAGTGTGGAAGCTCCCAGTGTGAGGAAGGTGCTGGACAGGGAGGAGCAGGATGTGCCCAAACAGAGCTGCAGAGCAGGTCTAAGGGAAGGGTTGAGGAGCCAGTGCATACAGGAGCAAGGAACCGTTCCCTTTACTACCAACCAGGGCTTCTCCTTAACTTGTAGCCATCGCCAGGCATGGTTCTGTTGGCTTCCTTCGGCATATTTTTATTGATCAGAAAACAAGTTGGTTGGGAGGCTGAGGTAGGAAAATTGACTTAAGTTCTAACCTGGATTACAGAGGCAGCCTTGTCTCAAAAGAACCATCCCAACAAACAAGCAAATCTGTAAATGCTGTGCCCTGACTGAGCACCGCTGGTCAAGTCAAATGGAGCTAACAGTGCAGGAAGGGAGGGTAGAGCATCCCAAGAGCTAAATGTGTAAAGTGTGTAAAGGCTAAATCCATACTTAGAAAGTACAGATGGCTTGAAAGAAGGACCAGGGCTCCTAGGTGGATGAGGATCATGGGAGTCTTCCAGGGAGGCTGATGAGCTGAGACCTGGGTGGCAGTGCATCTGAGAAGAAGGTCTTGCAGCTAAGAAGTGTCTGTGCCAGTGCTAAGCTGATTGGACCTCTCAACTTGAAGACCTGGTTGGCATGCATGCTTACATACATACATACATACCATACATACATACCATACATACATACCATACATACATAACATACATACATCTTTGACCCTCACAGTTGTTCCTTGGAATGGTGCAGATAGTATTCCTTTTGCAGCTGCTAAGAAGAATTTGTATTCAAATTGGGGGCGTCATGGTTGCCTAGACTCTCCCCTCCCTTTCCCACTACCGCCTCCCACTGGGGGTGGGTCCATGCACCAAATAGTAAGGGAACTCAGGTGTGTTCCTGCCTGACAGTGGGGTCTTCCCACCTCCCCTCTCCACTCACAG
Seq C2 exon
ATCCTTAAGCTGTTGAAGGGCAAGGTGGTGGTGGGGCACGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTCGGAGCCAGACCCGGGATACCACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTTATCCGAACTCGGGTCTCTCTTAAGGACCTGGCCTTGAACCTGCTGCACAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030609:ENSMUST00000107425:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=38.5)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types