RnoINT0014675 @ rn6
Intron Retention
Gene
ENSRNOG00000018421 | Aen
Description
apoptosis enhancing nuclease [Source:RGD Symbol;Acc:1305051]
Coordinates
chr1:140587564-140591276:+
Coord C1 exon
chr1:140587564-140588151
Coord A exon
chr1:140588152-140591075
Coord C2 exon
chr1:140591076-140591276
Length
2924 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCTTCCCTTTCCACCCACAGATC
3' ss Score
12.96
Exon sequences
Seq C1 exon
CACACTGCCTCGTGGGCAGACAGCCTCCAGAGCTTTCTTACCGCTGCCTGTGAGCTGGCTGGCATGGTGCCCAGGGAAGTCCCTGAGTCTTCCCTCACTAGCCTGAAGACCAAGGATGTGGCTCGGAGGAGACACAAAAGGAGAAGCCGGCAGCACCAGCGGTTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGTCGTTGAGCATGGTACCAGGGCCAGGACTCTGCCCTCTGCCCTCCCCAACACAGACGCCAGCAGGCACAGAGGCTTCAGGCAACAGGAAACAACGTACCAAGGCCAGGTCTGGCAGCAAAGGCCTGTGTAGCAAAAGGCCTGTCCCCAGAGAAGCCCCAAGCTCTGGGCCCAGCAAGTATGTGGCCATTGACTGTGAGATGGTGGGTACCGGCCCCCAAGGGCGAGTGAGTGAGCTAGCCCGCTGCTCCGTGGTGAGTTACAGTGGTGATGTTCTCTATGACAAGTACATCCGGCCTGAAATGCCCATTGTGGACTATCGAACCCGCTGGAGCGGCATTACCCGTCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAGGAG
Seq A exon
GTAAGGACCCTGGGCCTTATTTGGCCAGAATGACAGTTTGGGGAGAGAAGCCCTGGTGTGAGGGATCGCTTTGGACTAGGGTGAAGGGCCTTGAGATTGAGAAGTCACTTTACTTCTCCAAACATGCAGCTCCTTTTCCAGAGAATGGGTTAGCATAAATCTAGGTGCTACCACTCTGAAGGGTTGCCAGGCCAGGGGCTGCTTGTAGAAAGGTTATATGACAGGTAAGGGCATGATAACTTAGAGACTGCTCAGAATCCATAAACTTTGCCCGCGGCCCTGTCCCATCTCGTTATGGTTCTTCAGTGCTTGGAAAACTGACTAGTAGTTGGGATACCCCTGTGTGTTAGGAATCTGCAAAGGCCTTTGGCTGTAGGAAACAGTAGAAGCTGTATAGATGGACTAGAAGCCTTGTCCTGGTCTTCCACGGACACTGTTCCCCTGGATCTCTAGGGCTCGCCACGGTTGTCTGACAATCACTGTTAAGCCAGCGTCCCTATAAATAGGCCTCCCTCGGGGTTAATCAATGACCTGTTGGGTGATATCAACAGAGCCATGCCTGGTGTTGGCGAGAGAAACTCTATGACACGGGGCTTTTAAAAGGTAATGGCGTTCAGGCACAACTCTCAAAAGACTTGACGTCACCACAGGAGCAGAGAGATCTAATGGAAAATGGCACTCTGGTTTGCCTGTGGTTAGGAAATGCAATGACAGTAATCAGAGCCATGATTAGGAAAGGCCTGAGAAGGCTTGTGGAAGGAAGGTCAGGAGGACGCTGCTGTGGCTGTGTGAAGTGGGGTAGAGTTTCCGAGTCTAACACTGTATTAGGCTGGTGTGGCTCAGCGCTCTGGCAAACAAAACAATCGCTGGCAGGTGGTGGAGGTGTGCAGTGCCGTGTGCTCCTGGATCTGTTTAGCTGGCAGCAGTTGGCTGCATTCGTGTAGTGTTTATTCAGGTATAAAATTATGCAGAAACAAAGGCAAAATCCACATTCTGAAGTTCTGCTCTATCACGGTTATATCGGCAAATTCACTTCTTCAAAACAAGCATTAGAACAACTACTTTTTTTCTTTTCGCTCCCCACCCCCTGGAACTACATTTAAAAAAAAAAAAGATTTATTTATTTATTTATTTTAATGTGAGCACACTGTCACTGTCTTCAGACACACCGGAAAAGGGCATCAGACCTCGTTACAGATGGTTGTGAGCTGTATGATGTGTACAGATGATGGATGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCAGGACTACTTTTTAATGTCTCTGGGTTATTGGGATCAGGAAGGTTTGAGAAATACTTATATCTTATGATCTTTGTCATAGTGTGCTGGCTAGACATAAGCCAAAGGAAGCAGGACCTAAAGTTGAGAAAATGCCTCCTCTGGACTGGCCTGTTAGCAAACTCTTGATGTGGGAGAGCCCAGTTCACTGGGCAATGCTACCTCTGGGCTTGTGGTTCTGGGTGCTGTAAGAAAGCAGGCTGAGCAAGCCAGTAAGCAGCACTCTACCATGGCCTCCACATCAGTTCCTACCTGCCCTGCTGGAGTTCTTTTCCCGAATTCCCTCAGTGACGAAGCTGAAAGATGAACTAAGCCCTTTTCTCACTTATGGTCATGGTGTTTTACCATAGCAGTGGGAACCCTAATTAAGACACATACCATGTGCCCAAAGCACTGCTTTGGGAAGATTCGATCATGAGTGGAAGCATAGGAAGGTAAGTGTGTGGTGAGCCTTCTGTTCTGATTCCTCCATCCATGTTTGTGGGCAGTGACCCCTGGAGCAGGCTCATCTCCTTTCTGCTCCCTCATGGAGTAGGTTTGATTTCTTCCCCTCTTGATGGCAGGTCCGGTGTGAGACCGGGGTGATCCCATCAAAAATCTACATGCATCTTATTCAGACTATAAAAGCTGGGTTCTAGCTAGTACAGGTAGGCTGCAGAAGGCCAGGCATTAGCAGGCCTTCTTTCCCTGAGTGTGAGGAAAGGGAGGAGCAGGATGTGCCCAACCAGAGCTGCAGAGCAGGTTTAGAGGGAAGGAAGGGAGAACCAGTGCATACAGGAGCAAGGAACTGTTTCCTTTAGTACCAGCAGGGCTTCTCCTTAACTCTTAACCAGCGCCAGACACGGTTCTGTTGGTTTCATTCAATGGTTCTTTATTGGTCAGAAAATAAGTTGGTTGGGACGTTGAGGTAGGAGGATTGATTTAAGTTCTACCCTGGATTACAGAGGGAGTCTTGTCTCAAAAGAACCAGCCCAACAAACAAAAGCAAATCTGTGCATGCTGTGCCTTGGTTGAGCACCACTGGTCAAGTCAAATGGAGCTTACAGTGCAGGAAAGGAGAATAGAGTGTCCCAAGAGCTAAATGTGTGAAGTGTGTAAAAGCTAAATCCATACTTAGAAAGTATGGATGACTTGAAGGAGGGACCGGGGCTTCTAGGTAGATGAGGGTCTTGGGAAGCCTTCCAGGGAAGGCTCATGAGCTGAGACCTGAGTGGCAGAGGAACTGAGAAGGTCTTACAGCTAAGTGTCCGTGCCAGTGCAAAGCTGCTTGGATCTCTCAACTCGAAGACCTGGTACGAGTACGTGCATGCACGCATACATGCACACATACATACATGCATACACACACACACAAATTGACCCTCACAGTTGTTCCCTGTAGGGGTGTGGATAGTATTCCTTTTGCAGTTGCTAAGTATTTAAACTTGGGACATCATGGTAGCCTGGGCTCATAAACTACCCTCCCTTTCCCGCTGCTGCCTTCCTCTGGGGGATGGGGGAGTCCATGTACTTATGGTATGGGAGCTCAGGTGTGTTCCTGCCTGACAGTGGGGTCTTCCTGCCTTCCCTTTCCACCCACAG
Seq C2 exon
ATCCTTAAGCTGCTGAAGGGCAAGGTGGTGGTGGGGCATGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTGGGAGCCAGATCCGGGATACGACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTCACCCGAGCTCGGGTCTCTCTTAAGGACCTGGCCCTGAACCTGCTGCACAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018421:ENSRNOT00000064438:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=39.4)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]