BtaINT0015426 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017632 | AEN
Description
apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:HGNC:25722]
Coordinates
chr21:20002742-20006307:+
Coord C1 exon
chr21:20002742-20003281
Coord A exon
chr21:20003282-20006106
Coord C2 exon
chr21:20006107-20006307
Length
2825 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GACTCCTCCTCTGTTCACAGATC
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATGGTACCCCAGGAAGCTTCTGAGTCAGTGCAGTGCCCGAGCCCTTCCCTGGCCAGCCCGAATGCCAAGGATGTGCTTCGGAGGAAGCACAAGAGGAAGAGCCGACAGCACCAGCGCTTCATGGCCCGGAAGGCCTTGCTGCAGGAGCAGGGACTGCTGAGCCCACTCTGGGAGCCAGGACCCTCCCCTCTGCCTACGTTGCCCGGGGCCCCGCCAGGCACAGAAGCCACCAGCAGTGCCAGGCAGCGTCCGCGGGCTGAACCTGGAGGTGCTGGGTGCAGCAGAAAGCCAGCTCCCAGGGACTCTGCCGGCCCCTTGCCCAGCAAATGCGTGGCCATCGACTGCGAGATGGTGGGCACAGGACCCCGAGGGCGCGTGAGTGAGCTGGCCCGCTGCTCCGTGGTGAGCTACCACGGCGAGGTCCTCTACGACAAGTACATCCGGCCTGAGATGCCCATCGTGGACTACCGCACGCGCTGGAGCGGCATCACCCGGCAGCACATGCGCAAAGCCATCCCCTTCCAAGTGGCCCAGAAAGAG
Seq A exon
GTGAGGGCAGGGCGGGGGGCTTAGCCCAGGTCTGAGTTAACGTGTAGCCACTGGAAGCAGAGAGACCTTGGGAACCTTACTAAGCTTCTTCAAACAATGGGTTTCCTCTCCATAGGAAAGGGTGAGTAGAAATCCTGCCTTACCTGCATGGAGCGATTGCTGGCCGTCCCACGTGGTGGTGTGTGTGGAAAGGCTGTGCCTTTCCCACAAGATGGGAAACAGCTTATACTCCACATTTTCTTCTTCTGTTATAAAAGTACTACGTGTCTGCATAAAATGTATAAGGTCCATAGCATTGTCACCTTCAGGTGTTAATATTTTGGTATTTTTTTATGTTAGTTTTTAATTGCTTTGTTGTTGTTCAGTCAGTAAGTCATATTCCCACTCTTTGTGGCCCCATGGACTGCAGCATGCCAGACTTCCCTGTCCTTCACCACCTCCTGGAGTTTGCTCAAACTCATGTCCGTTGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTGCCTTCCATCTTTCCCAGCAGCAGGATTTTTTCCAGTGAGTCAGCTCTTCCCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGGTTGATTTAGGATTGACTGGTTTGATCTCCTTGCTGTCCAACGGACTCATTGCTTTGAGGAAAATTAATTTGTGGTTGGGACCACACTAACGTGCCAGGAACTCCCAAACATCCTTGAGCATAGGAAATATACCTAAATCCTTATTAACAATTTTGGATTCTTGTCCCAGATCCTCTCCGTAGAGGATCCTGCAAGTCTCTAGGTCTTGGGAGGGAATTGATGTGTGTTTCTAAAAACCATCGTGCTGTACAAACCTGTATGATAAATACCCTAGAGCTGATGGGGAAAATGGGGTTAGAGACACAACACTTAAGCTTTATCAATGACCCCCCAGATAAAAAGATAGAAGCCTAATAACAGTGGAAGCACAGTTTTGCACAGGTTCAGTGGTTAAGGAAAGTGTAAATTTACATATGGTGCTTTGTGAGCAAACTCCGGAAGATAGTGAAGGACAGGGGATCCTAATGTGCTGCAGTCCCTGGGGTCGCCAAGAGTCGGACCTGACTTGGCAACTGAACTGAACTGAACTTGCCTTGAAAAGACCCAGACACGACTTAGCGACTGAACTGAACTTGCCTTGATAAGACCTGGAGCACTCAGGGAAGTAGCTGTCGAGAGGATGGTGGCTTGTGCTGTGGTGGAGCGGTTAAGGGTGTTACCTGAAGTTAGGAAGTGGGAAGCCAGGTGTGGGAAGCATGCAGGTGAGCTAAGCTGGCTGGTAGACTTCTGAGGTGTGGGCACTTTGTGATTTCCCTGTGGCTCTGCTAAACTGAGTATGGTTTCTGCATTCACTCAATGTTTATCAAGGGCAAAATTTGCATTACTCTCAAGTCCCATCAACCAGGTTGGACCATTCTGCATTTTTAAACCAAGCATTGTAGCAAAGCTATACTTAACATTTCTGATTTGTTCTTGGGATGAGGTACATTTAGGGAATACTGATACAAGTCATCTTGTGTCTTCCTTTTTCACAGCAGATACAGTGTAAGCATTTCTCTTAAAAGGATATTTCAGGTGAGCTGATTAGGAATAGAGGCAGCAGGAAGGCAGACGGGTGGTGACCCCCAGCTCCTAGGGACGTCTCTTGGCCTGCCAAAAGCAGGCCCACGCTGGATCGGCTCACACTCTGAGCCAGTATGAATGGGGTGTGCTGAGTCCCTTCCCACCGTGTGGCTTGTGTGTATGTGTGTGGGGTGGTGGCCTATCCCTACCACTGAAGTCTAAGTGTGCCTTATCCATGTGCTATGAAAGCTGAGTTTAGTGATAAATCATGTGTCGCCAGCAGAGGTGGCTGTAGGAGGCTGGCAGTGGGTGATAAGGAGATGCGAGCCCAGGGAAGAGGGCTCCAGGGGTTTGCAGGCCCGTGGCCCTGGATGTGGCTTCCCCTGGAAGTCAGGAAAGAGAGCCTCACCCTGTGCAGATGGTCTGAGCTGAGCCAGAGAGCAGGTTCCGAGGGTGAGAGGTGGGAGTCCTGGACGGCAGAGGGGCAAAGGGACAGAATCCAGAAGACAGGGACTGCTGCGTTAGTGCTGAAAGAGCTGTCCTTGGTTGCGTGTCTCCAGTGCCTGGCACAGTTCTTTGGCTTCACCTGGCACGTCTCCCCGGACTCCCTCCTGTGAGCTGAGCTGTCACTGGGCACCACTAGTCTAGGCACACATGTCCCTGCATTTTACAATGAGCTTACATTGAGGGGCAGCTGAACAGGCCATGCGGAGCTGAACAGGTACTTAGACAACATGGTTAATCCCCCAGAGGAGAGAGCAGCAGGGGTCCTGGTGGCAGCCGGGGCAGACTCCTGATGTTTAAAGCTGAGCCCTGATGTGAGAGGGGCTGGTGGAAGTTGGGGGCAGAAGTAGGTGGGAGAGGGTCGGGGGTGGCTAAGTCTTCCAGGCTGAGAAGAGGCTGGGCCAGGAGGAAATATGCTTGTCTGGGATAACCTACCCATCTAAGAGCTCCTTAGTGCTCACAGCCACCCCACCAATGTGGTTGCCAGCTTTCCCATTTTGCAGGTGTGGGGGAAGCTTAAACAGGCCCCTGGTGATAGTGAGTAATGAGTCAAGGGTCTGCATTCAAACTTTGAGCAGCCTGATTAACTGTGGGGCCCATGGTCACCCCTATCTACGCTGCCTCCCCCCACAGGGGTCCCTGGACCACTGAGATGTGGCCCTTCCTGACTCCTCCTCTGTTCACAG
Seq C2 exon
ATCCTCAAGCTCTTGAAGGGCAAGGTGGTGGTGGGCCACGCCCTGCACAACGATTTCCAGGCCCTCAAGTACATCCACCCTCGGGGCCAGACCCGGGATACCACCTCCGTCCCCAGCCTCCTCAGCCAGCCAGGGCTCCACGTCCGGAATCGTGTCTCTCTTAAGGACCTGGCCCTGCAGCTGCTGCACAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017632:ENSBTAT00000023454:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=38.3)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]