HsaINT0082521 @ hg38
Intron Retention
Gene
ENSG00000091409 | ITGA6
Description
integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:172475597-172476513:+
Coord C1 exon
chr2:172475597-172475685
Coord A exon
chr2:172475686-172476394
Coord C2 exon
chr2:172476395-172476513
Length
709 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GGATGCCCTGTGTATTTCAGGTT
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATATTGCAGTTGGAGCTCCGTATGATGACTTGGGAAAGGTTTTTATCTATCATGGATCTGCAAATGGAATAAATACCAAACCAACACAG
Seq A exon
GTAACCAAATAACCGGGATTTCTACAGCTAGAGTCTCAACTTTTTGCCCTATAATAAAATATTTAGGTTTAAGTGACTTTTCACACAAATCTTATTTTATTTACAAGTCCACAATAGTATAAATTTTTTAAAAATGTATTACTAGAAGATACCTTCAAAATAAATATATAAATGTAATGACTTGCTTGTTCTAATTGTAAAATTTCTTAGATAAGTTAGGAATCAAGGTAATCCAAAGCAAATGAATGTTATTCTACCCTGACGGCATTAAGATAAGAGGAAATACGATATATTCTCTTTAGTAGCATACTAAATAGAGATGAAATTGGTCAAACAAAATAAATGACTGTAACTACATGGAGAATGTAGACACCAAAAATTAAAAATGTCTTTTGAGAAAAATAAGACTTGTAGGGAAGGTAGGGAGATTTGGTTTGAAATGGCCTGATTGACTTAATACAATAAACAAGCTCATCAGAAATGGGCTCTTTTCTGCTTTGAGATACTATGTAAATCGGATGACTTTTATGAAATGAAATGTATGAAGTGTTAGATCATATAGAAATTTATGACTTGTATATAATATAATTTACTTATAAGTGAACTCTCAAATTTCAGTTCAAAAGAAACTTGTGTGTCTTTTTCAAAGCATTGTTAAGAAGCTCATGGTGATAACCTAATGTCCATTCGGATGCCCTGTGTATTTCAG
Seq C2 exon
GTTCTCAAGGGTATATCACCTTATTTTGGATATTCAATTGCTGGAAACATGGACCTTGATCGAAATTCCTACCCTGATGTTGCTGTTGGTTCCCTCTCAGATTCAGTAACTATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091409:ENST00000264107:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGCAGTTGGAGCTCCGT
R:
GAAAATAGTTACTGAATCTGAGAGGG
Band lengths:
206-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development