BtaINT0077913 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24166158-24167069:-
Coord C1 exon
chr2:24166981-24167069
Coord A exon
chr2:24166277-24166980
Coord C2 exon
chr2:24166158-24166276
Length
704 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGATGCCCTATTCATTTCAGGTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATATTGCGGTTGGAGCACCCTATGATGGTAAGGGGAAGGTTTTTATCTATCATGGATCTGCGAATGGAATAAATACCAAACCAACACAG
Seq A exon
GTAACCAGATAACTTGGATTTCTATAGTTAAGGTCTCAGTAGTTTTCTTTCCAATGGATTGTTTAGATTTACGTGAATTTTCACACTAATCATGTGTTACTTACAAATCTAAAATTGTGTGAACTTTGGTTTTATAAAAATATGTATTAGAAAATAGCTTGTAAATAGATTTAAATGCAATGAGCTGCTTGTTTTAAACTGTAAAATTTCTTTGGTAAATTAAAAATCCAACTAAGCCAAAGGAAAAGACTGTTCTACCCTGGCAGCATAAGGAGATGGAATGTGATATATTTCCTTTAGTAGCATATTAAGAAGGGATGAAACTGGACAAACATAAGAGATGATTGTAATTGCATAGAGAATCAGATACCAAAATCTAAAAATTGCTTTAGAGGAAAATAAGACATTTGGAGGGCAGGAAGAGAAGTTTGGTTTGAAATACACTGATTGACTTAATATGGTACATAAGGTTATCAAAAATTCTCTTTGTCTTTTCAGATACAACATAAATCAGGTAACTTCTGTGAAAATAAAATGCATGAAATGTTTGATCATGTGTATGCTTATTTATAATTCAGTTGTGATTTAATATAATTTGTAAGTAAACTCTTTAACTTCAGTTCAAAAGAGACTTATCTTCAAAGCATAAATAAAAGGCTTATTTTAGTAGCCAGGTGTCCGTTCTGATGCCCTATTCATTTCAG
Seq C2 exon
GTTCTTGAGGGTAAGTCACCCTTTTTTGGATATTCAATTGCTGGAAACATGGACCTTGATAGAAATTCCTACCCTGATGTTGCTGTTGGTTCTCTCTCAGATTCGGTGACTATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGCGGTTGGAGCACCCTA
R:
TGAAAATAGTCACCGAATCTGAGAGA
Band lengths:
206-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]