HsaINT0082915 @ hg19
Intron Retention
Gene
ENSG00000082781 | ITGB5
Description
integrin, beta 5 [Source:HGNC Symbol;Acc:6160]
Coordinates
chr3:124578089-124592378:-
Coord C1 exon
chr3:124592293-124592378
Coord A exon
chr3:124578294-124592292
Coord C2 exon
chr3:124578089-124578293
Length
13999 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCCTCTTTTTCCCTGCCTAGGAC
3' ss Score
11.25
Exon sequences
Seq C1 exon
GTCTCAACATATGCACTAGTGGAAGTGCCACCTCATGTGAAGAATGTCTGCTAATCCACCCAAAATGTGCCTGGTGCTCCAAAGAG
Seq A exon
GTATGTAGGTGGGGGAGGGGAGGAAGAAGGGAAGGAATGCTGCGAGGGTGAGGGTGAGAAGGAGGCCAACACCACAACACACTAATTCACTATACATAAAAATCCTGTGCAGATTCTGTAAGCTGCCTCTTCCCCATCAGGGCAGAGTGATGACAAATCCAAGTTTATGAGACAATAAGATAAACTGGGTTTCTTGATACTGTGGAATGCTAATCCTGTTTTGGGGAAACAAGACTTTCCTTCCCTTTTGTTTGGAGACCAGTTAGGATTCATCTATAGTTTTCTGATCTTTGGTATAAGAACTCCAAAAGACCTGAGCTTGTGAATTGAGTTTGTTGCATAATGATTCAAAACATATCTAGATGGCTGGCATGTTGGTGGAAGCCAGTCATCTTAGTGTGTTTACTTGAGAATAAATATTAGGAATTAGCCTTTATGGAATGATTTTATTTAGAAATAATGGCTGCCATTTCTTTAAGCCTTTTAGAAAGAGATATAGGTTTGGGACAATGTTAGGCTATTGGTATCATAAAGCAATATGGGCTGGGTACTGTGGCTCATGCCAGCATTGTGGGAGGCCAAGGCAGGAGGATTGCTTGAGGCTTGAGCTCAGGAGTTTGAGTCCAGCCTAGACAACATAGCGAGATTCTATCTCTACTAAATAAATCAGGAAAGAAAGAAAGAGAGAGGGAGGGAGGAAGGAAGGAGGGAAGGAAATGTAACTTGGTGGACTAATCAGAAAATGATCGATTTCTAAATTTCCTCTCTTGAAGGAAATTTCTGGGTCACAAACCCTCCCTGTAAAAGTGCCCCATTAAGGTTATTTGTAAAGGAATCCAGGACTTTTTGACTGGCTCAGTCTGCAATGCAGTGCGTGGTCCCTGTCAGGAGGACCAAGAGATGGCTCACGGGAGGCTGGGGTTAGTCTCCATCATGGCAGCCTCAGAGGTCTAGGGATTCCTTTAACCTATGATGGCTAAAAATGATCATGTGGGGACTCTACTAGATGTCATACACTTTGTACATCATACAATATCTCTGATCCTCACAATAGCTCTGTCAGGTGGGTGTAATACACTTGTTTTATTGATGAAAATCTCAGACTCAGAGCAGTAAAATAACTCACTCAAGGTCACACAAGTGTGCCAAAGCTGGGGTTTTAATCTGACCTCTGAGCCCAAGCTTTTCCCTCCAGACTATATGGCCTCTTGCTTGCTATATGAACTCTCTAAAATGCCAATTTTAAAACTTTGGGAGTTCTCAATTTACTTTGAGAGTGGAATCTTCCCAACATATAAACCTTTAATCATATTTGTGATTAATTGTACCATCTTTGTTATCACCCTTCTTTAAAATCTTCCTTTCGTTCTCTATGACCTGCAGGGCAGATCCAAGCTCTGTGGCTCTTGCCTTCCTCCTACCATCATCTCTTGTCTGACCTGACATTTAGCCAGAGGGAACCACCTGCAGATACCCAGAGAGCCCAGCTTGAGAAACCCTGCCTGATCTTCCCGGTGTTTCTCCCCTCCCTGGAGAGCCTTCCTGGCTTTTTCTTCCTCCTTTCCTTCTTTTATTTATTTATTTATTTATTATTTATTTTTATTTTTATTTTTATTTTTTGAGACAGGATCTTGCTCTGTCACCCAGGCTGGAATACAGTGATGTGATCATAGCTCACTACAGCCTCCATCTCCTGGGCTCAAGCAGTCCTCCTACCTCAGCCACCAGGTAGCTGGGACTACAGGTGTGGGCCACTGTGCTCGGCTAATTGAAAAAATATCTTTTAGAGGTGGGATCTCTCTATGTTTCCCAGTCTTGTCTGAAACACCTGACCTCAAATGATTCTCTTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCATGCCCGGCCCCTCCTTTCCTTGACTGATACCTTGTTTTATCGTTTTTAAGAATCAATTCGGCCAGGCGCGGTGGCTCACGCCTGTAATCCTAGTACTTTGGGAGGCTGAGACGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTGTATTAAAGATACAAAAAATTAGCCAGGCGTGGTGTCATGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGACCTGAGATCAGGCCATTGCACTCCAGCCTGGGCAACAGGGCGAGACTCTGTCTCAAAAAAAAAGAATCAATTCAGGCCTGGTGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCTGAGGTGAGTGGATTGCTTGAGCTCAGAAGTTCAAGACCGGTCTGGGCAACATGACGAAACCCCGTCTCTACAAAAAATACAAAAAATTAGCTGGGTGTGCTAGTGCATGCCTGTAGTCCCAGCTACTTGGGGGGCTGAGGTGGGAGGATCACTTGAGCCCGGGAGGAGGAGCTGTAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCGACAAAGCAAGACCCTGTCTCAAAAAAGAAAAAAAAATTAATCAGTTTAACCTCATCTACTCCATAACGACCTGCATACCTGACTGTCTCCATCTGTCTATCCATTCATTTATCCATCCATCCATCTGTCTATTTATCTGTGTATCCATTTGATATGAGAATGTAAGCTCCCTCCACTGGGGTTTTTTTTTTTTTTTTTCTTTTGAGATGGGGTCTCATTCTGTAGCCCAGGTTGGAGTGCAGTGGCATGATGTCGGCTCACTGCCACCTCCACCTCCTGGGTTTAAGCAATTCTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGGCACCACACCCGGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGTGTGATCCACCATGCCCGACTGGGGCAGGGGTTCTATCTGTTTTCTTCATTGCTGTATTCCTGAATGGCGCTTACCACATAGTAGTTGCTCAAAGGATTTCACTGGATGGCTATTTATTGTGTGTCTGCTAGGTGCAGGCCATGACTACCTCTTTGTCTCCGTGTACTCTGTGCTTCTTTAGTATTTATAACCTCTTTTTGTTTTAATTTGTTTTCATGCCTGTTACCAACTAAATCATCATCTCCTTGAGAAACTAAACTGTCTTATCTTGGATACCCAGTATCCAGCCAAGAATCTGGCAGGAATTTGTATTTGATATAAGAGTACTGTTAAAAAGACATGAAGTTAGAAAAACCAAAGTTTCAATCAGTTTTGCTGTGATTTACTCTTAATTTCTTGATATGTAAAATGAAGGTGATTGTTCCCACCCTCCAGCATGACTGGGAGTGTAAAATGAGATCCGTGCATGAGAGGACTTGTGGACAAGGCTGATTAGCTGAGCCTCCTGAATGGCTGCCACTGTCATCCATGAGTATTTTCTAGTGACATGTGGCTAGAAAATCCAGAAGCCAGGTCCATTTTTACTTTAAATAGCTTCTTTCCTTGTGCTAGTACTTCCACAAGTCAGACTTCCTGATGCTGACAGTAAATGAAGGTGTCCCTAGGAGCTTGTTATCACCCCAGCCCACACTTAGGTTCCCTGTCCAGCCCACTGGGCTCCCTCTCTGCTCATCAGGAGCCTCATTCTTAGCTGAAGAAATTCCTATGATCCCTGCCCTGGAATGCAGCTTCCCATCTTCTTTGGGGGTGACTTTTCCCCAGGACATGGGTGTGTTTTAGAGAGCCAGGTTAGGAGAGTTCAGGAATGGTTATTTATTTATTTATTCATTTGAGGCAGGGTCTCACTCTCATCATCCAGGCTGGAGTGCAGTGATAGAATCATGGCTCACTCTAGCTTCAACCTCCCAGTCCCAGGTGATTCTCCTACCCAGCTTCCTGAGTAGCTGGGATTACAGGCGCGTGCCACCATACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCTGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAACACGCCTGGCCACAAATGGTTTTGATCAACCTGTACCCCTTAGCAAGACAGAGTAAGTGTGGCTGGGTGCCTTCTTAACCATATATCCCAGGACATCATCAAAGATGTAATAAGCATGTGATGTGTGTGTACACTGAGGGTTGCTGCCCAGTAGACAGCCGGTGAGGGCCAGGTTCCCAACCTATGAGGATGAATCCCATGGTACATTCCATGGGGATTCTCCTGCTCCAGATCCCATGAAGACTTACCCTTATTGTACTTGAAGTGGGCATGAGGATTCCTTATCCCTGCAGTTCACATTCCTTGTAACCTAATTCCATGCCTGCTGGCCACGTCTCCTCCCACAGGTATCATGTATGAGTCCATCAGTGTCCTTTCCCACCACTCCCTGCACGGTGCTCTTGCTGGTTCTCTCTTAGTTGGCTCTGTGTCACATCAGCCCTGGCTCTCTTGCTTTTGTTTACTTTTTTTTTCATTTTTAATCATTTAGTTAATTTATTTTCGGAGACAGGGTCTTACTCTGTTGCCCAGGCTGCAGTGCAGTGGTGTGATCATAGCTCACTGCAGCCTCAATCTCTCAGACTCAAGTGATCCTCCCACCTTAGCCTCCCGAGTAGCTGGGACTATAGACCTATTCCACAACATCCAGGCAAGTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTGGTAGAGAACAGGTCTCACTATGTTGCCCAGGCTGGTCTCCAACTCCTGGGCTCAAGTGATCCTCTCACCTTGGCTTCCCAGTGTGCTGGGATTACAGACAGTGAGCCACTGTGCCTGGCCTCTTGCCTTCATTTTCTCACCATGCTTTACCTGAGGGTTTCAGACTTACTTTCTGCCCTCATATCCAGAGTCGCCAGACTCTCCCCTACTCTGAGACCAGGATGTATGGGTCACTGCCTGTCTTGGCCTGTCCATGCTGCCCCTGCCTCTCTGCAGCACACTCTCTACCTTGTTCTAGACAGCCTTGGCCGCCTGCTTCTCAGCCCTTATGGTGCTGTTTGTACAGCACAGCTTAAGACACATGTATTAGTCTGTTCTCACATTGCTATAAGGAAATACCCAAGACTGGGTAATTTATAAAGGAAAGGGGTTGAATTGACTCACAGTTCGCCATGGCTGGGGAGGCCTCAGGAAACTTACAACCGTGGTGGAAGGTGAAGGGGAAGCAATGCACCTTCTTCACAAGGTGTCAGGAAGGAGAAGTGCTGAGCAAAGGGGGAAGAGCCCCTTATGAAACTATCAGATCTCAGGAGAACTCACTCACCATCAAGAGAACAGCATAGGGGAAACCGCCCCCATGATTCAGTTACCTCCACTTGGTTTCTCCCTTGATATGTGAGGATTATGGGAATTATAGGGATTACAATTCAACATGAGATTTGGGTGGGAACACAAAGCCTAACCATATCAACACACAACAAATCCCAGCAGTTTATGATCTATTTTGTCCATCATTTTTTAAAATGGACATTTTGTTTCCCCTCTAACATTGTAAATTTTACAACCTAGCCAGTTGTCATGAGGAATGTGCCTGGAGGAGAGTGTGCGGATGCTTTCAAGCAGGGCCTAGGGGTAGCCCACATTCTTCCTACTAGCACTGTTGCCTAAAACCCAGCCACATGGCAATGCCTAACTGCAATGAGAACTGGGAGACTTGCTCTAGCTTTGTGCCCCAGAAGAAAGGGAGAATGGGCTTGGTGTACTGGCAGCTTATGCTCGTGTCACTCGCAAGAGGACAGTGGTTTGGGAGAAGTGGGCAAGGCTGAGGGATCAGTGCTCCCTGTGAGAACAGAAAGCAGGGTTGGGGAAAGCAAGAAAGGAGGCAAAGGCAGACAGAGAGATTGCACTTAGGGTTTGCAGAAGTTGGGAGGTTGTCAGGGTGTGAATACGAGGCTCCGTGAAATGGTGTGGCTGTGGGCAGTACCAGGCTGCTGTGAAATCCGGGAGAAGGACCAGGTTAGGCAAGGCCACCACTGTGGAGCTGAATTCCCACAGGGAGAAGAACAGTGAGGCCATGGATGCATGGAAATGGGGTCGGGCATGGGAGAAGACTAGTGAAAAGAACAGTGAGGCCATGGATGCATGGAAATGGGGTCGGGCATGGGAGAAGACTAGTGAAGTCTGGGCTGGGGTGAGCGGTCTTTGCCTGGGGAAGTGGATGTGGAGAAGAAGCAATGAAGCATCAGTAGGATTGGAGGTAGGAGCATGAGGAGGGAGACAGGTGAGAGGCTGGGAAGCAAGATGGGCCAACTGAAATGAAAAGAATCAATATTCAATCCAGCTCACATAAACTATAGATTCTTTAAAGAACATCTCCTTGTGGTCAGATTCAATGAAAGAAATAATATTGGCCTGTTGTAGACACTTCATAAATATTTGTTCAGTGAATTAATAAGTCCATTGAAAGCTGGCAGAGGGATTTCTCCATCCCCCAGGCAGGGAGTATACGTGGCAGTGTGTTGCTGGCACACAACACACATCTTGGTTGTCATCAGCTACCTTCCCCTCAAATCCCTGAGGGTTCTGCCAAGTTGGAGCTGCAGGTGTGGCTGGTCAGGGGGCCAGGCCCTGCCATATCCCAGCCAGAAAGGTCGGCCTTAGCAAGAAGCCAGCTCCCCGCCTGTGTCCACTTCTCCCCTGGGCTCTCTGCCTTTTTCCCAGTTTGTTTTCTTCCCTCTTCATCCCAGGGATTGGGCATGCTGGCCTCCTTTCTTGCTTGGGTTCCTTTTGTTCAAGGGCCTACAGTTTCTCAACTCTTCTACTCTGTTTCAGAAACAAACAAGAATTTGTCTTTTCCCCCAAAACAATCACCCTCACCTTTTTAGAGTTTTAGCCTTCAGCAATGGTAGGCAGGATGGCACTCAAATAATGTAATGTCTGGTCTGGCATAGAGGAACCTGAATGCACTGGCTGTGATGCTGGACAGCCAAGCACCCATTGAACACTAGCTTTGACTGCAGGGTAAGAGACCTTGATTAGCAAAAAATATGTAGGGAGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAAGCGGGTGGATCACTTGAACTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATAGCAGTCCCAGCTATTCGGGAGGCTGAGGCATGAGAATCACTTGACCCCAGGAGGCAGAAGTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGCCTAGGTGACAGAGCGAGATTCCATCTCAAAAACAAACAAACAAAATATATATGGAGTCAGGTGTTAACATATTATAATAAGTAGCAGACCTCATCTTATCCTCCATGTAACAGTGATGATGGGGTGAGTGAGCATGGTGGCTTACAATAAGTTGCAAACACCAGTGTTGTAACAAACTAAAAACAATCTAAATTTTAAACACCTCTCTTTTCTCTTTTATATTATTACCACTTAGTAACTAAAAGCAGCAAAAGGCCAGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCGAGAGGATTGCTTGAGCCCAGGAGTTGTAGACCAGCCTGGGCAACATAGTGAGACCTGGTCTCTACAAAAAAAGTAAAAAATCAGTGGGATGTGGTGGCACCTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGGAGACAGCTTGAGCCTAGGAAGTTGAAGCTGCAGTGAGTGGTGATCACGTCACTGCACTCCAGCCTAGACGACAGAGCGAGACCCAGTCTCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAAGCCGCAAAGGACACTTCAACTTTCTATTGCCATTCTGCTGCTTTTCCCCTTTGGAGAGTTTGATAAGGGCATTTCTGGAGACCAGGGATCAATGCTTTGTTTGTGTACAGGAACCTCTTCCAGCATAGAGCATGGGGAGCATCTGCAAGCAGTTGTGTTGTGGCCCATTAGAAGCCCATCCTTCTTGCTTGGGTTCCTTTTGTTCAAGGAACAAAAGGTTGCCATTTTTGCCTGTTGAGATGAAGTCTCCCCTCCTCTTCTATAGGTTGAGGCTCCTCTGTACCTGTTTCTCTGCAAAAGGATATTTATCCCTCATGTTTGGTAGGTAACAGATCTCTGAATTTGGGGCAGCAAAGAAATGCTGCCTTCAGAAGGATGGAAGCTTTGGGCCCAAAGTTAGTTTCCTGCTGCAGAACTTGGCAGTGGCCTTGGCTAAAATGGGAGGCGGCACATGCTGCAAAGAGCACTGGATTTGGGCCCAAGAAGCCAGGGCCAGATGAACTTCAACTTCTTGGGTGAACTTAGGTCTGTGGACCTCTGATTCCCCACCTGTGGAAGCCAGGGGATGGCACCAGGTGATGCAGTCAAGGGCCCTTCCCCTTGGAACTTGCTATGTCTGACACCTGGCAGAGGGTCTGAGTGTCAGGTCTCTGGGATCTGAAACTGTTACGCCATCAGACATCAGGATGTCATTCATGTGAGGAGGACTTTCTTTTTCTTTTTTTTTTCAACTTTCATGTTAGATACAGAGGGTATATGTGCAGGTTTGTTATATGGGTATATTGCACTCTAAGTAGTGAGCGTAGTACCCATTAAGTAGTTTTTCGACCCATAAACTCTCCTGTCCCAGTAGTTCACAGTATCTGTTGTTCCCATGTTTATGTCTGTGGGTGCTCAATGTTTAGGTCCCACTGATAAGGGAAAACGTAGTATTTGGTTTTCTGTTCCTGCATTAATTTGCTTAGGAAGGAGGATTTTCTTAAACATCAGTCTGCCTTTTCTCTAAGGCTTTATGATATGAGGCATCCGTATTCATTGAATATGGAGCTTAGAAATATAGGTATTGAGGGGCCGGATGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACTATTCTAGCAAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAACTGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCCAGAGGCTGAGGCAGGAGAATGGCTTGAACCGGGAGGCGGACCTTGCAGTGAGCTGAGATCGTGTCACTGCACTCCAGCCTGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATATAGGTCTTGAGACATTTTTTCTTTCTTTCTTTCTTTCTTTTTCTTTTTTCTTTTCTTTCTTTCTTTCTTCTTTCTTTCTCCTCTCTCTCTCTTTCTTTTTTTTCTTTTTTTTTCTTTTTTTACCTTAAACTACTAAGGGTTAAGAGACATTTTCCAGATTTATAATGTTTGTATACCTGGAAGGTCATAGCCATTACTAGATATGCCCCTGGTCTCTGTCATTTTGGTTTTCTCTCTTTAAATATGCATCTATCCTTGTTCAAAATTAAAATATCTAGGCCAGGTGTTGTGGCTTATGCCTGTAAGCCCAGCATTTTGGGCGGCCATGGCGATCATCTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACATGGCAAAACACTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATAGTAGCACATGCTTGTAATCCCAGCTACTCCGGAGGCTAAGGTGGCGGGATCACTTGAACCCAGGAAGCAGAGGTTGCAGTGAGCTGAGATTACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAATGAAAATAAAAATACTTAGAAAGGAACACATGGAATAGAGGCGAAGCTCTTGGCTTGTGACCTAACTCCCTCTGTTGAGTCCGCAGCACTCTCAGTTCCTTTTCTTGGGCAACAAGAACCTATAGCTACAAATCAGTTATGGCTTACTCTTTCCTTATCGGGTCAAAAATAAATCAAAAGAAATTAGTCACAGCAATTGTTTGGACTCCGTGCCAAAAGAGATCTTTACCTCTTAGGGGAATTTCCCTGTTAAGGTAGCTGCCTTACCCTCAAAAGCTTCTTCAGACCTGCCTTGCCCCGTGGTGCCTCAGCTAGTGGCTCTGAGTCCCTAGAGCTCTGGGAAAATAATGACAGGACTCGATATATAGGTAAAGATGCCTCAAAGTTGTTGAGCACATCAACAAAACCATATGGCCTGACCTAGATAGCAAGAAAGCGAACTTTGACACTGATGATAGAGATGCCTGGCACTGAGAAGAAATCTAACTTTGGTCCGCGTGGCATATGGTGTGTCCTTTGCTGTCTATAAAGCTGGAGTTGCTGAGAATAGGACTCCCTTTGTACCATCATGTTGCTGACTTGGTCTGTGCTTCCGAAGTCAGTGCAACCCTGCAAGTTGCAGCTTTAATGTGATTAATGGTGGTTTCCACACTGGCAACCAGGTGACAGTGCAGGAGCCCATGATTCTTGTTGTTGGTGCAGCTAACTTTAGGGAAGCCTCGTATGCACTGGAGCTGAGGTTTATCACAACCTCAGCTGAAGAATGTTTTTAAGGAGAAACATGGGAAAACTGCTACCAGTGAAGGGCATGAAGAGGGCTTTGCTCCTAACATCCTAGAGAATAAAGAAGCCCCAGAGCTGCTACAGCATGCACTTGGGAAAGCCAGCGACACTACTAGGGTTGTAATAGGCACTGACCTGTCCGCCTCACAGTTCTTCAGGTCTGGGAAATATGATTTGGACTTTAAGTCTCCTGATGGTCCCAGCAGATACATTTGGCCCTGTACAAGTTCTTCTGCAATGATGGGTAGTATCCATCAAAAATCCCTTTGAGCAGGATGTTGGGAAGCTCAGATGAAGTTCACTGCCAGTGCAAGTATCCCAGCAGTGGGGGGGATCATCTCATTGACCAAACTGAAGGAATTGTGCACCTGCCTCCTGCTTAGGTGAAGCAGGTTGGCTCTGTGCCCTAGTCTATTCCAGAGTGTAAGCTGGTCCAGACCAGTGAGAGAGGTGTCAGGGGTTCTCATTACTCTGAAAAAACTGACCATGCTTCCGTTGCCACCCTGGTGGTGGGGCTGTGCACTGGACTGATCAAAACAGGTGCACCTTGACAAACAGAACTGGGCCAAGTATAGTCAGTTCCTCAGAAGCAGAGGGGCTGGATAGCAAGGCTCAGTTCGCCAGTGAGAAATTCAGAAATTCTCTAGCAGAGTAAGCACTGGGCAGGCAAGCCCCTGAGCTCTTCAAGCTCTGGAAAGCTAATTAGACATCTACTTCAGACAGCTCAAGACAGCAGACCCAAACTGGCAGGGCCCTCAGGTCGTTACCCCTCCTTTTCCAGAACCCTGTGTTTTTCTTCTCACTGCTTCACTAGAACTGCTATATCAGAGCCAAGCTTGACCACCTGGAACCCCATTTAGAAAGTTCTGCTTTTAAATCTAAGGCCAGAGGCCGGGTGCACTGGCTCACGCCTGTAATTCCAGCATTTTGGGAGGCCGAGGCGGGCAGATCATAAGGTCAGGAGATCGAGGCCATCCTGGCCAACATGGTGAAAGCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCGTGGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCAGGGAGTCGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGTACTCCAGTCTGGTGACAGAGCAAGACTGTGTCTAAAAAAAAAAAAAAAAATCTAAGGCCAGAATAATATATATATGTGTATCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATGTTTTGTTTTGTTTTTTTAACAAAGTCTCACTGTCGCTCAGGCTGGAGTGCAGTGGCATGGATCATAGCCCACTGCAGCCCGGAGCTCCTGGGCTCGAGCGATCCTCCCGCCTCAGCCTCCTAAAATGCTGGCATGAGCCACCATGGCTGGCTAGAAAACTCATTTTTCTAACCTTGTTGCACAACAAGTGTTTATGGAGCCACTTATACCTTTGATGTAGTCCTGGAGGTTGTTGACAGGCAAGATCCTCGGGGATTTAATGCACAAATAAAAAATCGTTATTAAAAAAAAACAACCCAGAATATAAACAAACATACCGTAGGCTTAGGACAATACATCTGGCTTTACTTATTTAAAAACACTGCAGCGTCTTCTTGACTTCTTGTTCTTTTTTGTGTTTGTTTTTTGTTTTTCTGAGACAGGCTCTTGCTCTGTCGCCCAGGCAGGAGTGCAGTGGCACAATCGCAGTTCACTGCAGCGTTGAACTCCCAGCCCAAATGATCCTCCTGCCTCAAGTCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCAGGCTGACTTCTTGATCTTGAATTTTATAAGGATTCTAAAGGGCATTGGGTAGTTCCAGGACATCTGAGACCTTGAGGGAGGGTGCATTCCTCTGATTTTTGTGCCTCTGCCAGCAGTCTGGCTTCTAACAAAGTGGTCAAGGGATGCTGACTCACATGAGGCTTCTGGCAAAGTGTTCCAGAGGGAAGAGGAAGGGACCAGTGTCCTAACTCCTCCAGAAAGACTCATAGGACAGCATTGGCTTCCAGCCTGCCAGAGTGGGGGGAATCTTGTTTTTCACATTCACCAGGGAAAAGGTGAAACCCCTTTGCCGGAAATGACCAGGGAGGCTTCATGATTTATAATAAAGTATATTGTTTCATTTTAAAGTTAATACCTTAACCTTCTGGTGTCCCAAATGAGGTTGAGTTGTTCTGATGTCCAGCTTTCTCCCAAACCCAAAGAAAGATTTTTCTTATCAATGTGTCGTTATCATACAAACAACAAAGATAAAAACAAAAATGTTTTTGTCACTTTACTATAACACCTCATTTAAAATTGTTCTTTCAAATCCTAATAAATACAATTCTATATTTTGGGTTTTTTTTTCCTCCTTAGTGTAAATATTTTAAATTTCTTCTTAATTCCCATAATTATTTGTAATGGCTGTCATCTATTGAAGTGATATGCTATGTTATTCTTATGGTTTAAGGATTTAGGTTTGCAAGTTTTAAAGATTATATTATAAGTAATACTGCCGTATATATCACATAGAGTTTCTCCTTTCTCTTTAGATGATTTTCTTGTAATAAGTTTCTTGGAGTAGAGCACTGGGTCAGTGGATATGACCTGTACTGCCACATTGTTCTCCTGAATGATTATCCAGCATCCAATGCCTGTGAAAGATGATAAGTGAACAACTTAAAGGTTAACTCTTGAATGCCCAAGGGAAGACTTTTCAGCTACTTATATGTCATCTTATTTATTTAACTATATATTATTTCATCTACTTATTTATTTATTTTTAGAGAGGAGGTCTCATTATGTTGCCCAGGCTGGTCTCAAACTCTTGATCTCAAGCGATCCTCCCACCTCAGTCTCCCAAATAGCTGGGATTACAGGCATGAGCCACCATGCCCAGCAATATATAACAACTTTTAAAAAATTTTAGCTATACAACTTCTGATCATTTCTGTTTCTCTTGCTAATCATGTAGGCAGTTAGGAGCATTTTAACCATCAAAATAACAACAAAACCGAACATTTTTATTATGTGTTTACAGTTTACAAAATGCTGTCATGTCCAGCAGCTCAGTTAATCCTTACAATACTTGGTGAAGCATCTGGGATAGGGATTACCATTTCCTCCATTTTCAGACAATGAAAATGGAAAGTAGAGAATTTAAGGTCAACCAGATGGAGACGCAGCCACGACATGCGATGTTTTCGGGAGACACCCTGACCACCTCCTGCTCTCTTCCTCTTTTTCCCTGCCTAG
Seq C2 exon
GACTTCGGAAGCCCACGGTCCATCACCTCTCGGTGTGATCTGAGGGCAAACCTTGTCAAAAATGGCTGTGGAGGTGAGATAGAGAGCCCAGCCAGCAGCTTCCATGTCCTGAGGAGCCTGCCCCTCAGCAGCAAGGGTTCGGGCTCTGCAGGCTGGGACGTCATTCAGATGACACCACAGGAGATTGCCGTGAACCTCCGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082781-ITGB5:NM_002213:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
NA
C2:
PF0036213=Integrin_beta=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)