HsaINT0082945 @ hg38
Intron Retention
Gene
ENSG00000139626 | ITGB7
Description
integrin subunit beta 7 [Source:HGNC Symbol;Acc:HGNC:6162]
Coordinates
chr12:53197750-53200446:-
Coord C1 exon
chr12:53200243-53200446
Coord A exon
chr12:53197952-53200242
Coord C2 exon
chr12:53197750-53197951
Length
2291 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
CGCCTTTTCTTGCTGAGCAGAAC
3' ss Score
5.55
Exon sequences
Seq C1 exon
GGCATGGTGGCTTTGCCAATGGTCCTTGTTTTGCTGCTGGTCCTGAGCAGAGGTGAGAGTGAATTGGACGCCAAGATCCCATCCACAGGGGATGCCACAGAATGGCGGAATCCTCACCTGTCCATGCTGGGGTCCTGCCAGCCAGCCCCCTCCTGCCAGAAGTGCATCCTCTCACACCCCAGCTGTGCATGGTGCAAGCAACTG
Seq A exon
GTAAAGATGGGCCTATGGTCTTTGAACCATGTGTATGTGTATGTGTATGTGTATATGTATGTGCAGCCTGGATATATGTGTGTGATTGTGTGGGCACATGTATGATTTTCTGGGAACACTCCACAGTCTCATGTGTGACTGAGTTTGTGCACATAGGACTCCTGTGTGTGGATATACGTGTGTGCATACACATGCATGCAAGTTTCTTGTGCACTTAGGATTATGTCTGTATCCATTTGCTTGTGTATATATGGAGAGAATTTGTGACCATGAATTGGGAGAAAGTATGTGCTTGTGGGAATTCATGCTTGTGTATAGGTAGAGGGAGCTGTTGTGTATGTAAACATGGGAGAAAGGTACTACCCAGTGCGGGCTGCCATAACAAAATACCATAAGCTGGGTGGTTTAAGCAACAGGAATTCATTTCTCCTAATGTTGGAAGCTGGGAAGTCCAAGATCAAAGTGCTGGCTGATTTGGTTCCTCAGTTAGGGCCCTCTTCCTTGCTTGCAGACTGGCTACCTTCTCGCTGTGTCCTCACATAGTGGGGATGGGGTTGGGGGATGGGGGTGGGAACTGCCTCTCTTCTTGTAAGCGCACTAATTCCATCATGAGGGTTCCACCCTTAGGCCCTCATCTAAGCCTAGGTACCTCCCAAAGGCTCCATCTCCAAATACCATCACATGGAGGGTTAGGGCTTCAACAGAGGATGGGGTGGGGGTGGGGAGGGGTAGGGGTGCAGAGTTCAGTCCATAGCAGCAAGTGTGTGGTTAGATTTCTAAGTCTGTGTTTTGGGTGGAGGCATTCTGTTCCTGGGTGTGTAGTAGCCTATGACTGGACAGGTAGAAAGGGAAGGGGTGGAAGCATATGGGCTTGAGGGGGACTGGAAAGGCTTGAGCTACCTAAGTGGCCAAGAAGGATGCTAGGGAGCAGGTGTCTCCCTGGCTCTTCAAACAAAGCTGTTGTTTGTTTATGCTTTAAAGAGACAGAACTCATGGAGCAGCAGAGCAGGAGGGGTGCCCAAGCTGGGATGGGGGCAGGTCTGCCTCTCTCAGTGTAAGATGGAGGGTTAGATCAGTGTGGGAGCCCAGATAAGAGATGGGGGCAAATTCACATGGAAGCAGAGCTACAGATGCTTAGAGGACCCAGGAGAAAGGCACACAGGGACCCAGGAGAAAGGCACACAGTGAATCTGACTGGACAAGAAGGGTAGATACTGAGTCTGCACAAGGCAGAGAGGCAGAGGTGCCAGGCTGGAGCTGGGGAGCTGGCGCTCTTGAGATGGTCAGGTCTGTGTCTGGCTTCTCCAGTCTCCTGACACCTAGGGCCAGCTGAGAAGCCGCTCTAACCATTTCCTTCCCCTGTGGCTTCCCAACCAGTCCCAGGGATACCAGACATATTGGTGGGGAGGACGCCTCCTCTTCTGTTCTTATCCTTTCCTTTCCAAGGAGCTGTGGGTCTTAGTCTGACCACCTTCCCATTTTGGTGTGAGCTTGCTGGGGAGGTTGGCCTAGGAGGCAAGGCCCCTGTTTTTTTGTGGTAGTGAAGTCTCTAAGATCTCAACAGGAAGTCTGTGACTCTATTGGGGAGGAGAGGGGTAGGTGGCTGGGGCAAGGGGGAGTTGAGATAGGGGAGGGGTGGGGGACTGCTATAGGAAGTGGGGCTCTGACAAGGAAGAAAGGACCAGAGTTCCACCGGTGGCGGTTCATGCCTGTAATCCCAGTACTTTGGGAGGCTGGGGCAGGAGGATTTCTTGGGGCCAGGAGTTCGAAACAAGACTGGGCAAAAAAGCAAGACCCTGTCTTTACAGTAGGAAAAAAAAAAAAGGCGTGGTGGTTCACGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGCACTTGAGGTCAAAAGTTTGAGACCAGCCTGACCTATATGGGGAAATCCCGTCTCTACTAAAAATACAAAAAACCTGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTACCGGGAGGCTGAGGTACGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCGGAGATAGCACCGCAGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAACAAAACAAAACAACAAAAAAGACCGGAGTTCAAGGGTAGCTGTGGCGAGGAAGAGGGGAGGGAATCAGGGACTCAAGGAGTGGACTGGAGGTGGGGGCATTAGAGGTGGCCGGGTTTGCAGGGTGTTTTTGGGAGCGGGGCCCAGGGCCTATGCAGGACCGGGTCCCGACGCGCCTTTTCTTGCTGAGCAG
Seq C2 exon
AACTTCACCGCGTCGGGAGAGGCGGAGGCGCGGCGCTGCGCCCGACGAGAGGAGCTGCTGGCTCGAGGCTGCCCGCTGGAGGAGCTGGAGGAGCCCCGCGGCCAGCAGGAGGTGCTGCAGGACCAGCCGCTCAGCCAGGGCGCCCGCGGAGAGGGTGCCACCCAGCTGGCGCCGCAGCGGGTCCGGGTCACGCTGCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139626:ENST00000549462:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(52.3=34.3),PF0036213=Integrin_beta=PU(43.6=25.4)
A:
NA
C2:
PF0143720=PSI=PD(65.3=69.1),PF0036213=Integrin_beta=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development