RnoINT0076439 @ rn6
Intron Retention
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143830730-143833386:-
Coord C1 exon
chr7:143833183-143833386
Coord A exon
chr7:143830932-143833182
Coord C2 exon
chr7:143830730-143830931
Length
2251 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
TGCCTCCTCTTGGTGTACAGAAC
3' ss Score
6.85
Exon sequences
Seq C1 exon
GCCATGGTGGATTCATCAACTGTTCTCATTTTTCTGCTCGTTCTGGGCGGAGGTCAGAGTGAGTTAGATACCAAGATTACGTCCTCAGGGGAGACCACAGAATGGGAGGATCCTGACCTGTCTCCACAGGGATCCTGCCAGCCAGCTCCTTCCTGCCAGAAGTGTATACTCTCACACCCCAGCTGTGCATGGTGCAAGCAACTG
Seq A exon
GTAAACATGGGTCTGCGGCCCCTGAACACGTGGGGTGCGTGTTGGGTGGGCATATTTGTGCTTTTTCTGGGTATACTCTTCAGTCTCACGTGTGGCTGAATTTGGACAGACAGGATTCCGACGTGTGACTCATATGCACATAAGTTTCTGTGCATACGTGGACGGAACCCGTGACCCATGAGCTCAGAGGAAGATGTCCTTGTGGGAGTTCATGCTTCTGCATGTGAGAAAGTGGCCTGGCCAGTTAAATTCTGTGACAATATGGAACAGAAAAATATCTCTTATGAATTGAGAGGCTTGGAATTCAAGAGCAAAATACTGGCCCGTTTGGTTCTCTCTGGACGATTTTTCCTGGCTTAGAGATGGGCCACCTTCTTGTTATATTATTACATGGGAATTGGGGTTTGGGGAGAGGGTCCCTTTGCTGTGGATTCTTTTAAAATGATATTTATTTTTATGTGAACGTGTGTTAGTATGTGGATGTGCACCCCATGTCTGCAGGCATCTGTCAAGGACAAAAAAAGGGCATTGGATCCCTTAGAAGTGGAGTTACCATGTAAACCACCATTCGGGTGCTGGGAACTGAACTTGTGTTTCTCTGGAAGAGCAGTGAGTGAGGTTAACCACTGAGCCACCTCTCCAGCCCTTCCTGTCGCATCTGAAGAGGGCACATCCCATCGTGAGGGTCTCACCCTTAGGACTTCACCTAAACCCAACCATTGCCCAAAGGCCTCACTTCACATACCATCACAACGAGAGTTAAACATTAAACCCAGGTGGGGAATTGTGGCACATGCCTTTTTTTTTTTTTTTCTTCTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGGCACATGCCTTTAATTCAAGCACTTGGGTGGCAGAGGAAGCAGGTCTCTGTGAGTCCGAAGCCAGCCTGGTCTACAACACAGATTCCAGGACAGACAGAGCTACATATTGAGGTTCTGTCTCAGACAGTAGATAGATGGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGACAGACAGATGGAGGGACAGACAGACAGAGGGACAGACAGATAACCACAGAGAATTTGGAAGAAGAATCCAGTCCATAGCAGAATGTACATGATGGGGCTTCTGAGTCTGTCTCAGGTATGAATGTGTGGATCACTATTTCCCAGCATGCAACTTGGAGAAGGAAGTAAATGAAGGCTTCCAAAAGCCTGTGGACTTAGGTGAGATTGGTGGGAGGAGGCCAGTGGGAAGCCCTGGGGTACCTGAGGGACAAAGGATGCTGCGGAGTGTGTAATCCTTGCTGGTCAAAAAAATGCTGTTCTTGATGGATGCCTTAAAGAGGAAGTGCTCCAAGAAGAGCTTCAGCAGCAGTCTCTCACAGGAAGATGGAGACTTAGATCAGTGCAGACTTGGTAAGTAAGATATAGGGCACACTGACAGGCAGCCATATTTACAACTGCCTAAAGGGACCACGAAACCATTGATAGTGAAACTGGAAGATAGACTCTGTAGGCAGGGAGGTAAAGGTTCTAGACAGTGGCTAGAGAGATAAGACTCTGGGGACAGCCTCTGATCTGTGTCTACCTCTTCCGTTCCCTAGGGGCTGGCACCAATGCCCACCGAGAAGCCACCTAACCATTTCCTTCCCCTGTGGCTTGTCAGTCAGTGTAGGGTACCAGACGTAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGCGCGCGCGTGTGCGCGGACGTGTCTGTCTTTATCATCCTCCTTCCCAGAAACTGGTGTGATTGACCGACCCCCTTCCTATTTTAATCTGGTCATGCAGGGGAAGTTGGACTACGGGGTGGTTTTTCTGTATCCTTGAGGTCCCAGAGATCTCAACCGGAAGTCTGTGGCTCTAGTGAGAAAGGATAGGTGGGAGGCTGTGGGGAAAGGGGAATTGAGATCAGGAAAAGGGCGAGGGACTGCTACAGGAAGTTGGGTGCTGATGAAGAAGAAAGGACTATAGGTTTTCCAAGTAGCTGTGGAGAACGTGAACTGTGAAAATAATCAGGGCTCTGGAAAGCTGGTTGAGAACAGAGCGGGATGTGTAGGTGATTGCAGGCGGTGGGGTTTGCAGGATGGTGTTGGTAGTCGGGTTGAGAACCGTGGGAGCTGGGGTTCAGTGTGCCTCCTCTTGGTGTACAG
Seq C2 exon
AACTTCACTGCCTCGGGGGAGGCAGAGGCGAGGCGCTGCGCGCGGCGTGAGGAGCTACTGGCCCGCGGGTGCCCCGAGCAGGAGCTGGAGGAGCCGAGAGGCCACCAGGAGGTGCTGCAGGACAGGCCACTCAGCCAGGGAGACCGCGGCGAGGGGGCCACCCAGCTGGCCCCGCAGCGGATCCGCGTCACGTTGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208:ENSRNOT00000016642:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=0.574
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=25.4)
A:
NA
C2:
PF0036213=Integrin_beta=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]