HsaINT0083175 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4695526-4699962:+
Coord C1 exon
chr3:4695526-4695570
Coord A exon
chr3:4695571-4699807
Coord C2 exon
chr3:4699808-4699962
Length
4237 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGGTGACTTTACCTCCTCAGGTG
3' ss Score
8.16
Exon sequences
Seq C1 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq A exon
GTAAGTATGGACAAGAGCCTTCTTGTCTTCATCTGGTAGGGTGCGGCCAAATGATCTGGAGCTCCATTTAAGAAACTGTCACTGTGGTCACGGAGTGCTGGGGAAGGAGGAACCTTAGGCTCCCTTAAAACACGATCATGTTCTGTGCTTCCCTTGAGAGGGACCATAGTCCTTTGTGTCTCGATTGGTCCAGGGACTGTTGTTGATGATGGTATTTCCATGTGTAGTAACGGGGTCTCCATTTCTAAGTTGGAGAAGTTCATGGTATCACTTGGAAGACTCCTAGGGTTGGAGACAGTGACACCTCATATGGAAGATGGTCTTTTCAAACCAATTGCCTTATTGCTGTTGACCTCAATCCATGACTCACACAGCTTTTTCAGGGAGTAAGTATGTGAGGTGGATAGTGTTACTGAGGCTATGGAGGTAACACATGAGGCTTAGTGCACCTGGCGTGTGATTAGATACTCAGCTAATCCGTCCTTGATTTCTGCAAGGTCAGAAATAGGCTTTAGTGTATAGGATGGTTTAGAATTTTAAGTGCAAAATGGCTCTTTCTCTGGAGACCATATCGCCAAGTAATGCTGATACGTAGACACTTTGGACTTCAGGTGTCCACATTTATGGGTTGAAGAAGGCAGCGGTTGTGTTACATGGAAAGGGTGGGTATAAGTAAGACAGTTTTCTTGTGGAGTGCTTGATTCTGGTCTAGGATTGAAACAGTTGCTCCTGTGTCTGACATGTGTGTCTACACGATGATCTCAGCAGTGGGCATGGAAGGTGGTATTGAGGGTGTTTCTTTCTTTTTTTGGCAAGATTTTGAAAAAGAAATGGAGGGATTTTCTTAAGGCACTTTAATGAAGGGAATTGGGTGAAGGGAATTCAAATTGTAATTGTCCTTGGAAAGTGTTGTGAATTCTGCTGTTATGGTTATCCTTCTAGTTATGTCTTGGTGAAATGTTGGCTTTGAAAGACACTCTGACTGAGGCCTTCCTGCTGTGGGTTTGTGGATTTGCTGGGGAGCCTCTCCTCCCTTTTGTGCTCCTTACTGGGGTACCCGAGGCTCACCTTCCTTTTTTTCATCCTTGTCACCCCTATTTCTAGAGTCCATTTTGAAAGCTTTGCTTCCACAGTTAATATGGCTTGGAAAACCCTGACCCAGTTTAACCCTCTGTCAGTGCATGAGGAACTCTGTGGTAAAACTTCTCTGCATCATGTTCATGTTGTTATTGTTTGAACACTTGGACTGGGAGGGACGTCATGTTTCACAGGATGGTTCTTGTCCTTGCACCTTCTTTATTTCAAGAGAAGGAGCTGCCTCTGTGTGGCCAACATCTGGTGGTCTCCATGCTGCCGTCTGTGGTGACATGGAGGAAATCTTACCTCTGAGATTAGGCAAGCTGTGGATCCTTTCGGTGAGCGCTGATGTCCAAGTGAACTTTGTGCTCTGGCGGGTAGAGGGCTGCTCTCCTGGCCTCCTGGTACAGGAGGGAAGACTGGCATTTATGGTGCAGGAGGAAGAGTGCAGTTTAAATACCAGACCTACCATTTATGAGCTGCTGTGTGACCTTGGACAAGTTACTTGCCCTCTCTGAGCCTCAATTCCTTCATCTATACAAGTGGCATTTTTCAGGTTCTCCCAGATCATTAGCATTTTTAGTGCCTTTGCGTCCACCAGGTTGTCTGGGCTGCACAGCAGTGTATAAAAGGAGTTAGGGTGGGTTTTAGGATCTTCCTGGTACAGAGGAGGAAGCAGCCGTTGAGAGTGGTCCAGACTCATCCCCCATCTCAGGCTCCCTCAGAGTTCAGTGGTCTTTTGACGTTTTCGTGCTTTTTGGCGTCAGAGAGGCGGATGTGCCAGCAGCCTTGGGTGCAGATCTAGACTGCATCACTCTGGCTACTTCGATGTTGATTGGGGGTGGGCTGCTTGCAGAGGAGGGGTGCATGGAGAGGGGATCTTACCCGACGCCCACACGGCCAACAGCACAGATCTGCCCGGTGGCAAGGTGTTAGTACTGGGAGGACCCCACCCCCCTCATACTCTTCTTGGTTTGGAAACTTGGATGGAAAACCTCGAATTTTTTTGAGTTGATTGGTTTCCCTAAGAACAGCTTCAGTGCCTGTGGTTTTTGCCTCGGACCTCACTTGGCTTTGTTGTGCTCGTCCTTCTAAATTCAGCACCCTGAAGACACTTGCTTGGTGCCAGAGGGAGAAAAAGGACCACCAGAGGCTCCCGCTCCTCTGCCAGGCTTCTGCACATGTGCCTTTCTTTCCACTAGGTGGCAAGCGCCGACTGCACAATGAAAGGATGTCAGGACGCTGCCTCTCAGTCACTTTTCCAGACACAGTGGACGTAATGCAATTGTGATTTTCCTCTCAACTCCCACAGGTCTCTGAAACTTAACTGCCAGCCTGTAGCTGAGTCCTGTGTCTCAAACCATAGCCAGGTCAGAGTTTATTTTGAAAGTGGCATGTGGAGTAATATGCCAGATGGTTCGGAGAGAACAAATGTTGCTCAAAGTTCTTACTCCTAAACTGCAGTTGTAGAAGTGTTCTGTCACTGTCCAGGTAATTCTTCCTTTAGCGTAGATAGAATAAAGGGTCTGGGGTTTGTGCAAGTAAAGGGATGAGCAATTAGAGGAGAAATTGTGAGAAAGGGAAGAGATACAGGTTTTGGATATTAAAAGAACCTTTTTTAAAAAAACACACATAGAGGTTGGGGGCCGCAGCTGAACTAACAGGCTATTGCCCTGTGCTCCTGCATTTCAGGCCCCGTAAGAGTTAGATTCTCCCAGGCTCTCTCCTTTGCCTTTGATTTGATTTCCGTTTCTTGATTCTTTTGTTTTCCTGGTGAAGTCTCCTTCCTCTCTGTCTGGAAAGGGGGCAGAGCTTCAGCCTAAGAAAAGCAGGCTGTAGTGACAAAGAAAATGTGCTTCCTCAATAGATGCAGGTGGAGGCTGTCATCCTGCAAGGATGTTAGACATGGAAAATCACGCGATGTAGAGTTGCCGGGCTGAGCGCGAGCTGGCCAGTCTCTTCTGAGCAGACTCCTTGTCTAAGCCCCCTCCTTGAATATCTGTAGGCAGATGGGCTTTGGAGCCTAGAATATGCTTTTTTAGTTTCTCAGGAAAGTTTTCATCATTGTTCCTCAGCCTTCGCTATCAGAGATTTTCTTCGCTCTCAGCCAAATCCCTGATGTCTCAGGAGAGGCCCGTCTTCCCTGACCTGTCATCAGCAGCCCTCTCAATTAATGCTGGACATCTTTTTCAGGGCTACGCTGACTTCTCAAATATTTCTTTTGGCTGCGTTGGGGTTGCTGCTTACGAACACTTGGATTCAGGTTTATTTTGTTTTAGTTTTTCTCCTGGGAAGTTGCTATATCATATTGTGAGTAGACAATTATCACTGTAGATGAATCCAGCTGCCCACAACCAAATCTGCAGGATGAGTTTCCTCAACATCCCCTCTCCCCTAGCTCCTGCGGATGGATGTACCTAGAGTTTTTTTTTTGTTTTTTTTTTTTAATCATCTGGAGCACTCCTTCCACGGTCATCTCTTAGTGTAACTGCACGTTTTTGAAAGATTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGTCTAGGCTGAAATGCGGTGGCGCGATCTCAGCTCACTGCAACTTCTGCCGCCCAGGTTCAAGTGATTCTTCTGTTTCAGCTTCCCAAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTATTGACGGGGTTTATATTGGTCAGGCTGGTCTTGAACTCCCGAACTGAGGTGATCTGCCTGCCTTGGCCCTCCCAAAGTGCTGGGATTACAGGTTTGAGCCACTGCAGCCAGCCTGGGCTAATTTTTTGTATCTTTAGTAGAGACGGGGTTTCATTATCTTGGCCAGGCTGGTCTTGAACTCCAGACCTCGTGATCCACCTGCCTTGGCCTCCCCAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCTGGAACATTTTTATTGCAACACAAAGAGGTAGAGCGTAAATATCCCTGGCTGCATGGCCAGTTGTCATCTTTTAGGACTGCTCTGTAACTGTGGTCCTTTTCCTGCCAACTGCTGACATTCACGATCCTTTCTTCTCCGTTCCTGTGGATTGTGGAATAATTGTAGAAAGTGAAGGCTTTGGCATGCATGGTTCTTGATTTGGTGACTTTACCTCCTCAG
Seq C2 exon
GTGGACCCTGATCAGGACGCCTCTCGAAGTAGGTTGCGGAATGCCCAAGAAAAGATGGTATACTCCCTGGTCTCTGTGCCTGAAGGCAATGACATCTCCTCCATTTTCGAGCTAGATCCCACCACTCTGCGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_001099952:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(13.1=100)
A:
NA
C2:
PF0281514=MIR=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)