MmuINT0084419 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108315293-108319159:+
Coord C1 exon
chr6:108315293-108315337
Coord A exon
chr6:108315338-108319004
Coord C2 exon
chr6:108319005-108319159
Length
3667 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCCACACCTTTTGCCCCCAGGTG
3' ss Score
10.95
Exon sequences
Seq C1 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq A exon
GTAAGTACAGGCAAGAGCCTTCTTGTCTTTGTCTGGTAGGGATAAGGCCAAGTAATCTGGAGCCGCATTTAAGAAATTGTCAAGTGGCCTGTGAGCGTTGGGGAAGGGGAAGATTTAGGTCACCTTCACCAGGCTCTTGTTCTGTTCTTCTCTTAGAGAATGTCCTACCTTCCTGTGGTCTTGATGGTTTGCCTGTGTGTTCGGTCAAGAGTCTACACTTCTAAGTTGGAGAAGTGCATGCGTCTCTTGGAATATTTCTGGGTGGGAGATGGTGGTGGTCCTTATGCAAAGGTGGCCTCTAACCAACAATAGTCTCTTAGTGCTGTTGACCTTGACCTGTGACTCATCCAGGTTTTGAAGTGATAGTGTGTAGTATCTTTTCGACTGTTGAGATAACACATGAAGCCTGGGACACATGTCCTCCAATGGGACAATCAGATGGCTGACCTCTAACTTTGCTTTTTTACAAAGTCAAAATGGTGTTAGGTTCTGATGTGATTTGGAATTTTATTACAAATGGATTTAGCTTTGGAAAAATCGTGACCAAGGAATATTGATTTGTGCGTACCCCAGGTAGGGGATGAAGAAAGCAGTGGTTATGTTTCATGGACATAGGATATCCACAGAATGGTTCTATTTGCAGAGTGCTTGGTTATGCTGAATTCAAACCAAACAAAATGCCAGACCGTTGCTGTCTGTTTGACAAGTTAGTACGTGTCCTGGTCTCAGTGGCTGGTGTGGCAGTTAGACTCAAGGGCACTTGCTTTTCTAGGAAATTTGGGAACAGCACATAAAGGAGGGGAAGTAAGGCAGAGATAAGTCCAAAGGAAGGGCCCAGGAATCTTGTGCTAGTGGTTAACTTTCTAGTTATGTTTGGGTAGAGGGCTGGCAATAAAAGAAAGAAAGTCCATTGTGGCTGAGGACTTCTGGCCATGAATGACTACATAGACTTCTAGGGCTTTACTAGTGACATCTCCTCCTCTCTGTCCTACAGAGTGCCTGGGACCCATCTCCATCTTCCCATTGCCTTTCTGTCACCTTTACTTATGCAGACAAGTGGAAAGCTTGTCTCCCACAGCTAATCCATCTTAGAAAGCAGACCTAATCCAGTTTGCTGCTCGTGTGAGCCCTTGGCCTGACTGTTTTTTCTTGTTTGATATTTCTTTTTTTTTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAATTCAGCAGTCCGCTTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGAGCCACCAACGCCCACTTTGTTTGATATTTCTTATTCTTGGACTGTCATTATCTGAGAGAAGTAACTGCCATGTATGGCATCAACGCTGCCAGCTGAGGTATCACAGAGGGAGTCTGACCTTTGGCATGAAGATAAATCATTAATCATTAGAAGGGGAGATGCTATCTAAGTGAGCCATGGGCACTATAGGAGATGGCATCATTCCATTAGGTTCTGTATATGAAGGAAGACACTATTTGCAGGGTAAGATAAAGTGTGGTGCTTGCAAACCCAAGGAGGAAGAAGAAAGACAGACCTTTATTTAAATAGACTGATCATCGACAAGTCATATGATCTTGAATAAGTAGCTTTCCCTCCCTGAGCCTCAGATTCCTTCTTTGTACCAGCAACATTTTCACGTTGCACAGGATCAGTAAGGACTTTAGTGTGCTCATATCCAGCAGGTCATCTTGACTTCACAAGAGGTAGGAAATGCCTAGGTGAGTGGTCTCACATGATGTGTATCTCAGGTTCTTTTGGGTTGAGTGGTCTTTCTGAGCCTCATGCTTCCTTATAGTGTGATACACCAGCAGGCTGGGTGAGGATCAAGATGGCAGTTCTCTAATGGTCCCAAGGTTGCTGGACCTTGGGTGCACATGGAAAATGAGTGTGTAGAGAGTGTCTCACTTGTATCCAAGAGACTTGGAAGCACAGTATTGGTCTTCATAGGCAAGTATTAGCCTTGAGAGGGCCCGGCTTCCCTTCTTTGCCTGTTTAGCACGGGAGTGAGAAAGGGAAGGGTAGTCATAAACCTGGGTGAAAAGCATCCTCTTCTCACCTGCGTATGGTTTTCCTGGGGCTTGGCATCAAGGAAGAGGTAGACCTAACTAGCTGTGCGCTGCGCCTTCTGAAATCAATGCTCACTTGCCTGGCCCAAGAGAGCAAAAGCCCAATCAGAGGCTTGTTCTCTGCTGCTCTTTGCACATGTGCCTTTCTTCCCACTAGATGGCACATGCACACCAGCGACTCTGCTGCTGGGTTCCCTGGCTAGGTAAAGAAAGTATACTGAAGGCACAGTTTTCCTCAGGATCTGCTGCTATCTCTGATCTGTCACTGCCTGTAACCATGCCCTTAGTTATAGTTGGTTCAGACCCTGTGTTGAGAGTGGTGTGTAGGACATGTGACAGGGGGCAGGAATTTGGTGCGAACAGATGTCCATGGTTTCCTTCCTGAATAGAGGCACAGAATGTGCTTGCTCCAGATGTTCCTTTAGTGAAGAGAGAGTAAAATGCCTTGGGTTTTTAGGTACTGAGAATTTCTTAAATGGATTTTTAGTTGTGGTTTGGTTTTTGAGACAGAGTCTTCCTATGTTGCCAGGGCAGGTCTGGAACCCTCGGGTTCTAGCACCACCACAATCCCCACAAGCCCCAGCATCCCGAGTAGACCTGTTAGCCGAGACTACAGATATATACAAGGCGAGATCTATTTTCTGGGCAACAGAGGCTAGATCTCAGCCGTATGTAGCTGTTTTCTTACTTCTTTTCCTTTCCCTTTGATATGACTTCCTGGTATAGATTATAGTATCTTCCTCTGGGTGTTTGGGCAGGAGACGATGTTTCATCCAGAGAGAAGCAAGCCAGGGATTAGGAAAGAGTACTTCCCCAGCAGGTGCAGGGCATGTAGTCCTACTAGGAATGCCAAGCATTTATAAGAATTGCATGCATGGTCACTGAGAGAGACATTGTAGAGTCCATCTGGTCAGGCATTCAGGCTAAGGCCACTTGCTAACATCTCTGACATGTGGCCTTTGCTTTGGAGACCCAGGACACCTTCATTGTTCATCACGTCTTACTATGAAGGATTTTCCTTCATTTCAACCAAATCCCGCTGTAGCATGAGTGGCCCTTTGCTTCAGCAACAGTGGACTTCTTAATCAATGACCAGTGTGTTTTTAGAGCTAGAGTGACTTGACAAGCTATACTGGAACTATTACTAAGGGACACTTGGATTAGGGCTTATTTCTTCTTCTAGAAAATACCTGTGCCTTATTTTTGGTAGACAACCATTACTGTATCTTTGCACCACCACAAATAAAAGGCTGACAGGCCAAGTTTCCTTGTAACTATATGGAGTGAAGGTCTTCAGTTCTTGTAGCTCTTTTTCTATAGTCATATGCTGTTATTACTTCACAGTGCTTGAAGATTTTGTATGACAGTAGAGAATGTGTGGCCGTGGTCACTGTGCAGGGCTACTCTGAAACCGGACCTTCTCCTGCCAGCCGCTGACACTCACTGTCTCCTCTCGTTTCTTCCTGTGGACTGGACAGATGATGTTGAGGGAGGCTGTAACCTACTGAGCTCCTCACTCCACACCTTTTGCCCCCAG
Seq C2 exon
GTGGACCCTGATCAGGATGCATCTCGGAGTAGGTTGAGAAACGCGCAAGAAAAAATGGTATACTCTCTGGTCTCCGTGCCTGAAGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACGACTCTGCGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(6.9=100)
A:
NA
C2:
PF0281514=MIR=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: