RnoINT0076624 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140398420-140402117:+
Coord C1 exon
chr4:140398420-140398464
Coord A exon
chr4:140398465-140401962
Coord C2 exon
chr4:140401963-140402117
Length
3498 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCTACATCTTTTGCCCTCAGGTG
3' ss Score
10.74
Exon sequences
Seq C1 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq A exon
GTAAGTATAGGCAAGAGCCTTCTTGTCTTTGTCCGGTAGGGATAAGGCCAAGCAATCTGGAGCCCTACTTAAGAAATTGTGAAGTGGCCATCGAGTGTTGGGGAAGGGGAAGATTTAGGTTCTCTTCACCAAGGTCTTGTTCTGTGCTTCTCTTGAAGAATGTCATCTCTTCATATGGTCTTGGTGGTTTTCTTGTATGTTCGGTCAAGAGTCTATACTTCTCAGTTGGAGAAGTGCATATGTCTCTTGGAATATTTCTGGGCGGGAGATGGTGGTAGTTCTTATGAAAGGTGACTTCTTACAAACAATTGTCTCTTAATGTTGTTGACCTTGACCTGTGACTCATCAAGATTTTGAAATGATAGCATGTAGTATCTTTTCGACTTGTGAGATAGCACATGAGGCCTGGGACACATGACCTCCAATGGCACAGTCAGGTAGCTGATCTCCAACTCTGCTTTTTACACAGTCAAAAATGGCATTAAATTCTGATGTGATTTGGAATTTTAGTGCAAATGGATTTAGCTTTGGAGAAATCATGGTCAAGTGATATTGATGTGTGCATACCCCAGGTAGGGGCTGAAGAAGGCAGTGGTTATGTTTCATGGACATGGGATATCCACAAATGGTTCTATTTGCAGAGTGCTTGGTTATGCTGAATTCAAACCAAACAAAATGCCAGGCCATCACTGTCTGACAAGTTAGTACATAGCTGTTCTCAGTGGTTGGTATGGTGGATTCGAGGACACTTGTTTTCCTAGTAAAATTTGAAATAGCACATCAAGGAGGGGAAGTAAGGCGGAGATAAGTCCAAATGAAGGTGCCCCAAATCTTGTGTTAATGTTTAACTTTCTAGTTATGTTTGGGTAGAGGGTTGTCAGTGAAAGAAACTGAGCCTTTGTGGCTGAGGACTTATGGCTGTGACTACATAGACTTCCTAGGGTTTTACTAGGGACATCTCCTACTCTCTGTCCCAGAGGGTGCAGGGACTCATCTCCACCTTCCCGTTGCCTTTCTGTCACCTTTACTTCTGCAGACAAATGGAAAGCTTGTCCCCCACAGCTAATCCAGCTTAGAGAGCAGACCTAATCAGCTCGCTGCTGGTCTGAACCCTTGGCCTGGCTTTATTTTCTTGTTTGACATTTCTTATTCTTGGACAGTCTTTATTTCAGAGAAGAAACTACCATGTATGGCCTTTGCACTGCCAGCTGAGGTATCATAGACGGAGTCTGACCTTTGGCACGAATATAAATCATCGCTCATTAGAAGGGGACATGATGTCTAAGTGAACCATGAACACTATGGGAGAGGGCACTGTTCCATTAGGTCTGTATATGAAGGAAGACAATGTTCATTGTAAGATAAAGTGTGGTACTTGCAAACCCAAGGAGGAAGACAGACCTTTCTTTAAATACCAGACTTGATCACCAACAAGTTGTATGATCTTGAACAAGTAATTTTCCTTCCCTGAGCCTCAGTAACTCTCTTTGTACCAGCAATATTTTCAGGTTGCACAAGCTCAGTAGAGATGTCAGTGTGCTCGTATCCAGCACACTGGATCTTGGCTTCACGAGAGTTAGGAAAGGCCTGGATGAGTGGTCTCACAAGATATATCTCAGGTTCTTTTGGGCTCAGTGGTCTTTCTGAGTCTTACACTTCCCCATGTTAGTGATATACCAGCAGGTTGAGTATGGATCAAGACGGCATTGCTCTGGTGGTCCCAAGGTTGCTGGACCTTGGGTGCACATGGAAAATGAGTTTATAGAGAGGGTCTTACTTGTATCCAAGAGACTGGAAGCACAGCATTGGTCTCCATAGGCAAGTGTTAGCCTTGAGAAGACCCTGTTTCCCTTCTTTGGATGTTTAGCTTGGGAGTGAGAAAGCTGGGTGAGCAGCATCCTCTTCTCATCTGCTTATGGTTTTCCTGGAGGCTGGCATCACGAGACAGACCTAACTAGCTGTGTGGTGCTCCTTCTGAAATCAGTGCTAACTTGCCTGGCCTGAGAGAACAGAGGCCAACCCGAGGCTCGTTTTCTGCTGCTCACTGCACATGTGCCTTCTTCTCACTAGATGGCACATGCACACCATGACTGCTTCTGGGCTCCCAGGCTAGATGAAGAAAGTGTCCTTGAAGGCACAGTTTCCCTCTGGATCTGCTGACATCTCTGATCTGTTACTCCCTCTAACCAAGCTCTTAATTACACTTGGTTCAGACCCGGTGTTGAGAGTGGCATGTAGGACATGTCGCAGGGGACAGGAGTTTGGTGAGAACAGATGTCCATGGTTTCTTTCCTGTAGAGAGGCACGGAATGTTTTTGTTCCAGATGTTATTTTAGGGTACAGAGGGTAAAATGCCTCAGAGTTTTAGGTACTAAGAGAACTTCTTAATTCAATTTTTAGTTGTGGTTTGGTTTTTGAGACAGGGTCTTTGTATGTTTCCTGGGCAGGTCTTGAACCCTTGGACTCAAGCACCACCACAACCCTTGCGAGCTCCCAGTCTCCCTAGTACACCTGTTAGCTGAGACAACAAATCTATGCAAGGCCGGATCTAAGAAGTTAGATCCACTCTTGTGGAGCTGTTTTCTTATTTTCCCTTTGCCTTTGATGTGACTTCCTATTCAAGATTCAATATCTTCCTCTATGTATTTGGGAAGGAGGTGATGTTTCATCTAGAGACAAGCAAGCCAAGTGTGAGGAAATAGTGTTTTCCCAGTAGGTACAGGGCATTTGGTTACACTATGAATGTCAGGCATTGAAAAGGATTGTTTGCATGGTCACCAAGAGACATTGCAGAGTCTATCTTAGCAGGCATTCAGGCTAAGACCACTTGCTAATACCTCTGGCATATGAGCTTTGCTATGTAGACGAAAATGTGTCCTTAGAGTTGCCCAGGATACCTTCATTGTTAGTCAGGTCTTACTGTGAAGGATTTTCTTCCATTTCAACCAAATCCCACTGTAGCATGAATGGCCTTTTGCTTCATCAGCAGCAAACTTCTTAATCAGTGACCAATATGTTCTTTAGGGCTAGAATGACTTGACAACCTATTGACAATTGGAATTGTTAGTAAGGGACACTTGGATTTAGACTTACTTCTTCTTCTAGGAAGTATCCACGTTATTTTTTTGGTGGACGGCCATTACTGTTTATTGCACCACCACAAATAAAAAGTTTGATAGGCCAAGTTTTCTCCAGTGCTTCTCTGCTTCCCGGCAGTTGTGTGTGGATGTAGCTATTGGAGTGAAGATCTTCAGTGACTACAGTTCTGTTTGCATAGTCTTCTGCTCTTGTCACTCTTCAGTGCTTGAAGACTTCATATGAGTGCCCTCGGATGAGGTGGCCGTGATCACCCTGCAGGGCTACTCTGAAACTGTTGTCCTTCTCCTGCCAGCTGCTGACACTCACTGTTTCTTCTCTTCTCTTCCTGTGGACTGGACTGATGCTGGTAAGGGAGGCTGTTACCTGCGGAGGTCCTTACTCTACATCTTTTGCCCTCAG
Seq C2 exon
GTGGACCCTGATCAGGACGCATCTCGGAGCAGGTTGAGAAATGCCCAAGAAAAAATGGTGTACTCTCTGGTCTCTGTGCCTGAGGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACAACTCTACGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.187
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(6.9=100)
A:
NA
C2:
PF0281514=MIR=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]