HsaINT0084337 @ hg38
Intron Retention
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr17:42159731-42162321:-
Coord C1 exon
chr17:42162248-42162321
Coord A exon
chr17:42160436-42162247
Coord C2 exon
chr17:42159731-42160435
Length
1812 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACTCGATGTGTTTTCAACAGATC
3' ss Score
9.62
Exon sequences
Seq C1 exon
GGACCAGGCCCAGCCCAGAATTGGCCAGTGAGGCTGAGGAGGTGAAGGAAAAGGTTTGCCGGCTGAACCAGGAG
Seq A exon
GTGGGTTGGGGCTGGCTCAGAGACGTGCCTGATATAACAGCATTTCAGACCCTACACGTGGCTCACTTGAGGTCAGGAGTTTGGGACCAGCCTGGCCAACATGATGAAACCCTATCTCTGCTAAAAAATACAAAAATTAGCCAGGCACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGACAAAATTGCGCCATTGCACTCCAGCCTGGGCGACAGGGCAAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAAGAGAGAGATATTCACGCTAGCTAGATGACCTTGGGCAAGTCCCACAACCACTCTGAACTTAAACCTTGGGCAAGTCCCACAACCGCTCTGAACTTAAACTTCCTCATCTAAAATGGGGAAATAGTAATATGTGCTTCCCAGAGTTTTAAGGATGAAATGAGAGTGCATATGTGCCTGGTCCAATCCCTGGCATGTCATAGGCACTCCGTACCAGTTGGTTTCCTTCCTCCCCGACTGGCTCAAGTTTCCCAGCCTGATAAGAGCATCTCTTCTCCCTCCACCACTGTAGGACTCTTTCCTGCCCAGGCCCTACCTCTTTCCCTTACCCCAGCCGTGGGTAATGAGTGCTAAGCAGATGCAGGGGCAGGGGACAGGGAGGCTGAGAGGCCTTCAGGCCTGGGGGACCTGGATCCAGATGTCTGAACTCTGTCCAGGAAGAACCTAGATTCTATATGCTGAGGCTCAGCCTCTGCCTCCTCCCCAAGGGATCTCAGAGTTGTCACCGCAGAGCAACCAGGCCCAGCCCCTGGGAGCCAGCCTTCCCTGTGTTCTGATAAACATCGGGCATCCCAGAGGGGCGGTGCCTGGGCTGTTTCAGGCCCTGGGGCCTGAGCGGGGCTGGCTCTTGTTCAGCAAGCTTGAGGGCAAGTCCGCTCAAGGCCTCAGGCATCCCTCAATTCTAGGCCAGTGGTTCCCAAACAAGTATCTGTCAGAACTACCTGATAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGTGGGTGGATCACGAAGTCAGGAGATGGAGACCATTCTGGCTAACACGGTGAAACCCTGTCTCTACTAAGAATACGAAAAAAATTAGCCGGGCGTGGTGGCACACACCTATAGTCTCGGCTACTTGGGAGGCTGAGGCAGGAGAATCTCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAGAACTACCTGACAACCTATTAAATGCAGATTTCTGGGCCTCTTAGGATTGGGAATGTCTGGGGCGGAGCCCAGAAATGTGCCTTTTCAAAAGTTTCTTAGTTGATTCTCTAGTCGCTGAAGTGTGAAAAGCACTGATAGAGACCCTTGAGCTTGTGTGATGGGATCAGCTGAGAATAATAAGGCTGTCACTTCACAGATGTGTGGCCTCTTTGAGCACATTTTTTAACATCTTGGGAAAGCTCGCGCGCGCGTGTGTGTGTAGGGGAGGAATAGCAATATCTGCTGCCCCAAATCCTTTCTGGAAAGAGACTGGGGCATTTTCCATCTAGGCAAAAATAACCCTCATCCTGCCTTTTTCCCAGGGTGGCCATGAGCAGAAAGTGGCTGCGAAAGAGCTTTGTAAACTGGAGAGGGGGGTGCACCTTGTTATTACTGTGGCACCTGTGAAACAACTCGATGTGTTTTCAACAG
Seq C2 exon
ATCTCTCGTCTCAATCAGGAGGTGTCTCAGCTTAGCCGGGAGCTGCGGCACATCATGGGCCTGCTGCAGGCCAGGCTGGGTCCCCCAGGCCACCCAGCAGGCTCCGCTTGGACCCCAGACCCTCCTTGTCCACAGCTGAGGCCACCATGCCTCTCTCCTTGTGCGTCCAGACCACCACCCAGCCTCCAGGATACTACGCTTGCTGAAGTTCACTGCCCAGCCAGTGTGGGGACCATGGAGACAGGGACTGCGCTCCTGGACTTGAGACCTTCCATATTGCCCCCCTACCCCTCAGAGCCTGACCCTCTGGGACCCTCTCCAGTGCCAGAGGCCTCACCCCCAACCCCAAGCCTCTTGAGGCACAGTTTCCAGTCCAGGTCAGACACGTTCCACTGACCCTGGCCCAGGGCCCAGGCCTGTCTGGGGTGGGCGCTGCCGCTCACCACTCAGGGAGGACCTGGGCCCCTTGGCTTCCTGCCTTGGGGTCAGCAGCCACCAGCTGGCCTGGTTGGCTCTGGATTTCTGGACTTTTTAATGAAGCGTGGTTACCTCTGACGCTATTCCCTTTTCCAAGCCTTCCCCAACCTCCCCCTCTGTGAGGGGAGCCACCTGAGGGCTGTGGAACCCAGCAGGCATGAGATGAACCGCAGTGCCCATTGGGCTGGGCAGATGAGATCCTACTTTCTCCCCAGGACCTGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558:ENST00000264661:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGTTTGCCGGCTGAAC
R:
CACTGGAGAGGGTCCCAGAG
Band lengths:
351-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development